View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_246 (Length: 243)
Name: NF10233A_low_246
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_246 |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 41222322 - 41222154
Alignment:
| Q |
69 |
ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgccgaaagctagcgaccttatctttggaaactcac |
168 |
Q |
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| T |
41222322 |
ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac |
41222223 |
T |
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| Q |
169 |
tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat |
237 |
Q |
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| T |
41222222 |
tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat |
41222154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41222747 - 41222675
Alignment:
| Q |
1 |
aatatttttataaagtgaccatatatttaagatat--atatcgcgtcacaataaatttacattacattaattg |
71 |
Q |
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| T |
41222747 |
aatatttttatgaagtgaccatatatttaagatatatatatcgtgttacaataaatttacattacattaattg |
41222675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
| Q |
87 |
caacatagagaaattaacaatacttaacttttgcatgtttcggagttgccgaaagc-------tagcgaccttatctttggaaactcactgatatgtaat |
179 |
Q |
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| T |
13375861 |
caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat |
13375960 |
T |
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| Q |
180 |
tcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
13375961 |
ctttgaagagtagtcatggcacccaaccagtctggca |
13375997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
| Q |
87 |
caacatagagaaattaacaatacttaacttttgcatgtttcggagttgccgaaagct-------agcgaccttatctttggaaactcactgatatgtaat |
179 |
Q |
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| T |
16985223 |
caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat |
16985322 |
T |
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| Q |
180 |
tcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
16985323 |
tcttgaagagaagtcatggcacccaaacagtctggca |
16985359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 16779031 - 16779091
Alignment:
| Q |
156 |
tttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
16779031 |
tttggaaactcatagatgtctaatacttgaagagaagtcatggcacccaaacagtctggca |
16779091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
| Q |
150 |
cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
38942998 |
cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca |
38943064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 7055564 - 7055522
Alignment:
| Q |
174 |
tgtaattcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
7055564 |
tgtaatacttgaagagaagtcatggcacccaaccagtccggca |
7055522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
| Q |
150 |
cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
38941663 |
cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca |
38941597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 6375 - 6415
Alignment:
| Q |
176 |
taattcttgaagagaagtcatggcaccctaccagtccggca |
216 |
Q |
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| T |
6375 |
taatacttgaagagaagtcatggcacccaaccagtccggca |
6415 |
T |
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