View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_248 (Length: 243)

Name: NF10233A_low_248
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_248
NF10233A_low_248
[»] chr7 (16 HSPs)
chr7 (1-230)||(12177803-12178031)
chr7 (50-220)||(22318618-22318785)
chr7 (81-215)||(42335930-42336062)
chr7 (64-220)||(26914311-26914465)
chr7 (66-220)||(35812621-35812774)
chr7 (24-177)||(3351128-3351283)
chr7 (65-173)||(15133276-15133384)
chr7 (65-208)||(26448387-26448533)
chr7 (50-220)||(40351723-40351890)
chr7 (95-177)||(21129326-21129408)
chr7 (96-174)||(30095739-30095817)
chr7 (64-220)||(3940620-3940773)
chr7 (53-153)||(21828233-21828332)
chr7 (125-209)||(26912345-26912427)
chr7 (65-220)||(13431634-13431786)
chr7 (97-162)||(36066175-36066240)
[»] chr4 (15 HSPs)
chr4 (22-216)||(12320415-12320610)
chr4 (50-216)||(43515810-43515975)
chr4 (50-220)||(7853302-7853469)
chr4 (83-220)||(23870054-23870189)
chr4 (32-177)||(35372043-35372191)
chr4 (50-230)||(3643099-3643279)
chr4 (17-177)||(5627539-5627701)
chr4 (96-220)||(36071557-36071679)
chr4 (53-161)||(55147627-55147735)
chr4 (91-165)||(29118532-29118606)
chr4 (83-204)||(7102166-7102284)
chr4 (65-184)||(20811476-20811595)
chr4 (84-161)||(2113903-2113980)
chr4 (133-161)||(9983769-9983797)
chr4 (133-177)||(29369934-29369978)
[»] chr2 (22 HSPs)
chr2 (64-220)||(5163799-5163953)
chr2 (15-195)||(16547694-16547877)
chr2 (23-194)||(36186534-36186708)
chr2 (50-227)||(30257734-30257913)
chr2 (53-220)||(28556563-28556727)
chr2 (95-220)||(17271259-17271385)
chr2 (50-177)||(2886979-2887106)
chr2 (64-177)||(37912341-37912454)
chr2 (50-176)||(34345977-34346101)
chr2 (64-177)||(16646927-16647040)
chr2 (50-133)||(34909269-34909352)
chr2 (135-220)||(35280969-35281055)
chr2 (88-177)||(38134119-38134207)
chr2 (119-177)||(28148936-28148994)
chr2 (95-220)||(38561849-38561971)
chr2 (83-172)||(4206326-4206415)
chr2 (129-220)||(36506905-36506994)
chr2 (95-177)||(15925527-15925611)
chr2 (186-220)||(28226834-28226868)
chr2 (135-220)||(40876964-40877047)
chr2 (60-229)||(39769808-39769976)
chr2 (50-110)||(15925950-15926010)
[»] chr6 (15 HSPs)
chr6 (15-220)||(35121865-35122073)
chr6 (50-220)||(9815627-9815794)
chr6 (50-220)||(34573142-34573310)
chr6 (15-173)||(33344873-33345033)
chr6 (50-220)||(12174327-12174495)
chr6 (50-161)||(34329777-34329888)
chr6 (26-154)||(4337556-4337687)
chr6 (88-220)||(31787822-31787952)
chr6 (64-220)||(10668849-10669000)
chr6 (66-165)||(32331517-32331616)
chr6 (89-165)||(31153630-31153706)
chr6 (135-220)||(34540899-34540982)
chr6 (53-132)||(34969860-34969939)
chr6 (50-161)||(11274617-11274728)
chr6 (83-115)||(19638396-19638428)
[»] scaffold0531 (1 HSPs)
scaffold0531 (14-220)||(9708-9916)
[»] chr8 (15 HSPs)
chr8 (26-220)||(13580286-13580480)
chr8 (50-195)||(13236212-13236357)
chr8 (54-220)||(4350622-4350793)
chr8 (100-217)||(22930331-22930446)
chr8 (95-220)||(26835593-26835716)
chr8 (53-174)||(43872558-43872679)
chr8 (125-220)||(34142031-34142124)
chr8 (88-220)||(9191207-9191331)
chr8 (84-165)||(24606832-24606912)
chr8 (84-227)||(9052871-9053017)
chr8 (83-159)||(35480989-35481066)
chr8 (97-177)||(22486596-22486676)
chr8 (57-161)||(26801916-26802019)
chr8 (127-220)||(28376664-28376754)
chr8 (125-166)||(18987200-18987241)
[»] chr5 (12 HSPs)
chr5 (50-221)||(32257639-32257808)
chr5 (50-174)||(10325554-10325681)
chr5 (88-220)||(12263638-12263770)
chr5 (54-177)||(7886571-7886693)
chr5 (65-176)||(25034322-25034433)
chr5 (96-220)||(502812-502931)
chr5 (83-177)||(20870678-20870772)
chr5 (84-159)||(3193510-3193585)
chr5 (50-220)||(16570450-16570618)
chr5 (63-177)||(3596879-3596993)
chr5 (95-161)||(18626722-18626788)
chr5 (120-161)||(18600251-18600292)
[»] chr1 (16 HSPs)
chr1 (22-220)||(1240434-1240637)
chr1 (64-195)||(35405366-35405497)
chr1 (50-177)||(33735699-33735831)
chr1 (15-161)||(22667113-22667260)
chr1 (18-161)||(49762370-49762515)
chr1 (26-177)||(23897827-23897982)
chr1 (88-157)||(10976110-10976179)
chr1 (50-220)||(8246671-8246842)
chr1 (50-161)||(29062320-29062431)
chr1 (84-220)||(1153713-1153846)
chr1 (50-161)||(15103005-15103112)
chr1 (50-220)||(35204172-35204337)
chr1 (186-220)||(30717897-30717931)
chr1 (126-216)||(35384135-35384224)
chr1 (65-142)||(35383783-35383859)
chr1 (129-177)||(4626564-4626612)
[»] chr3 (13 HSPs)
chr3 (98-220)||(15670925-15671045)
chr3 (95-232)||(33510096-33510234)
chr3 (94-220)||(11383598-11383724)
chr3 (25-177)||(47000793-47000946)
chr3 (64-172)||(11365100-11365208)
chr3 (95-177)||(27538784-27538866)
chr3 (50-216)||(33682616-33682780)
chr3 (138-220)||(18257924-18258008)
chr3 (65-174)||(33290750-33290858)
chr3 (126-177)||(32286011-32286062)
chr3 (138-219)||(19149892-19149971)
chr3 (84-161)||(168674-168750)
chr3 (53-129)||(52704608-52704684)
[»] scaffold0527 (2 HSPs)
scaffold0527 (65-165)||(1705-1805)
scaffold0527 (65-165)||(9768-9868)
[»] scaffold1173 (1 HSPs)
scaffold1173 (54-165)||(388-499)
[»] scaffold0031 (2 HSPs)
scaffold0031 (84-165)||(47547-47628)
scaffold0031 (188-220)||(46834-46866)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12178031 - 12177803
Alignment:
Q  1 ttgttcgtatggttagggccagtcctaagagttttggtgccctggacaaaataaaattgtgctcttttaattattccaaaagttttcttcttacattttt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| || ||||||||||||||||||||    
T  12178031 ttgttcgtatggttaaggccagtcctaagagttttggtgccctggacgaaataaaattgtgccctattaattattctaatagttttcttcttacattttt 12177932  T
Q  101 tgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatatt 200  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||||||| || |    
T  12177931 tgttgcaaaagattcatctat-aataaagttttctaaaaatatattttcaataaaattaattaaaccgaattaaaaagatatatatatctatatagtact 12177833  T
Q  201 aactactaagtaaaaataattttgatgtcc 230  Q
    ||||||||||||||||||||||||||||||    
T  12177832 aactactaagtaaaaataattttgatgtcc 12177803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 22318618 - 22318785
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||||||| |||||| ||||| ||| |||||| |||||||||||||||||||||||||||  | |||||  ||||||||||||||||||||| ||    
T  22318618 aataaaattgtgcccttttagttatttcaatagtttttttcttacattttttgttgcaaaagatttatttataattaaagttttctaaaaatatattctc 22318717  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||||||||||| |||| ||||||||   | |||  |||||||||||||||||||||||| ||||||||||    
T  22318718 aatataattaatcaaacggaattaaa---agatacatatctatataatattaactactaaataaaaataat 22318785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 42335930 - 42336062
Alignment:
Q  81 agttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacac 180  Q
    |||||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |     
T  42335930 agtttttttcttacattttttgttgcaaaagattcatttataatcaaagttttttaaaaatatattttcactataattaattaaaccgaattaaaaagaa 42336029  T
Q  181 atatgtatctatataatattaactactaagtaaaa 215  Q
    |||  ||||||||||||| |||||| ||| |||||    
T  42336030 ata--tatctatataatactaactattaactaaaa 42336062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 26914311 - 26914465
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||  || | |||||||||| ||||||||||||||||| |||| | |||||  || ||| | ||||||||||||||||||||||||||| |    
T  26914311 cttttaattattttaatatttttcttcttgcattttttgttgcaaaatattcatttataattaacgttatttaaaaatatattttcaatataattaatca 26914410  T
Q  164 aaccgaattaaaa--acacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    || ||||||||||  | |||||||    ||||||||| |||||||||||||||||||||    
T  26914411 aaacgaattaaaagtaaacatatg----tatataatactaactactaagtaaaaataat 26914465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 35812774 - 35812621
Alignment:
Q  66 tttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattt-tcaatataattaattaa 164  Q
    |||||||||||||| | | |||||||| ||||||||||||||||| |||| | ||||| ||||||| ||||||||||||||| |||||| |||| || ||    
T  35812774 tttaattattccaatattattcttcttgcattttttgttgcaaaatattcatttataatcaaagttatctaaaaatatatttatcaatagaattgatcaa 35812675  T
Q  165 accgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    | ||||||||||| | |||  |||||||||| || ||| || ||||||||||||||    
T  35812674 agcgaattaaaaagaaata--tatctatatagtactaattattaagtaaaaataat 35812621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 3351283 - 3351128
Alignment:
Q  24 cctaagagttttggtgccctggacaaaataa--aattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctat 121  Q
    ||||||| ||||||| ||||| |||||| ||  ||||||   ||||||||||||  || | |||||||||| |||||||||||| |||| |||| | |||    
T  3351283 cctaagatttttggtaccctgaacaaaacaataaattgtttccttttaattattaaaatatttttcttcttgcattttttgttgtaaaatattcatttat 3351184  T
Q  122 aaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    || ||||||| |||||||||||| |||||||| ||||||| ||| |||||||||||    
T  3351183 aatcaaagttatctaaaaatataatttcaatagaattaatcaaagcgaattaaaaa 3351128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 15133276 - 15133384
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaa 164  Q
    |||||||||||| || | |||| |||||||||||||||||| |||| |||| | ||||| ||||||| ||||||||||| |||| |||| ||||||| ||    
T  15133276 ttttaattattcaaatattttttttcttacattttttgttgtaaaatattcatttataatcaaagttatctaaaaatattttttaaatagaattaatcaa 15133375  T
Q  165 accgaatta 173  Q
    | |||||||    
T  15133376 aacgaatta 15133384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 26448533 - 26448387
Alignment:
Q  65 ttttaattattccaaa-agttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||| |||| | |||| ||||| |||||||||||||||||||||| | ||| | ||||||| |||||||||||| ||| | || ||||||| |    
T  26448533 ttttaattatttcaaatattttttttcttgcattttttgttgcaaaagattcatttattatcaaagttctctaaaaatatacttttagtagaattaatca 26448434  T
Q  164 aaccgaattaaaa--acacatatgtatctatataatattaactacta 208  Q
    ||  |||||||||  | | |||| |||||||||| || |||||||||    
T  26448433 aagtgaattaaaaagaaatatatatatctatatagtactaactacta 26448387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 40351723 - 40351890
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||| | | ||||||||||||| ||   |||| ||||| ||||||||||||  |||||||  | ||||| ||||||| | |||||||||||||||    
T  40351723 aataaaattcttcccttttaattattctaat--tttttttcttgcattttttgttgataaagatttatttataatcaaagttctttaaaaatatattttc 40351820  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||| ||||||  ||    ||||||||| | |  | ||||||||||||| |||||||| ||||||||||||    
T  40351821 aatagaattaaacaaggataattaaaaa-ataattatatctatataatactaactactgagtaaaaataat 40351890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 21129326 - 21129408
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||||| ||||||||||||  | ||||| |||| || |||||||| |||||||||||| ||||||| ||||| |||||||||    
T  21129326 attttttattgcaaaagattaatttataatcaaaattctctaaaaaaatattttcaatagaattaatcaaaccaaattaaaaa 21129408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 30095739 - 30095817
Alignment:
Q  96 ttttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaa 174  Q
    |||||| |||||||| |||| | ||||| ||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||    
T  30095739 ttttttcttgcaaaatattcatttataatcaaagttatctaaaaatattttttcaatagaattaataaaagcgaattaa 30095817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 3940620 - 3940773
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||| || | ||||||| ||  ||||| ||||||| ||||||  | ||||| ||||||| | |||||| ||||||| |||| ||||||| |    
T  3940620 cttttaattattctaatatttttctttttgtatttt-tgttgcacaagatttatttataatcaaagttctttaaaaagatattttaaatagaattaatca 3940718  T
Q  164 aaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||   ||||||||| | |||  ||||||||| ||| | |||||||||||||||||||    
T  3940719 aagtaaattaaaaagaaata--tatctatattatacttactactaagtaaaaataat 3940773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 21828332 - 21828233
Alignment:
Q  53 aaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaat 152  Q
    |||||||| | ||||||||||||| || | ||||| ||||  ||||||||||||| ||||||| | ||||| ||||||| ||||||||  ||||||||||    
T  21828332 aaaattgtacccttttaattattctaatatttttcgtcttttattttttgttgcacaagattcatttataatcaaagttctctaaaaa-gtattttcaat 21828234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 26912427 - 26912345
Alignment:
Q  125 caaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaa 209  Q
    ||||||| ||||||||||||| || |||| ||||||| ||| ||||||||||| | |||  |||||||||| || ||||||||||    
T  26912427 caaagttatctaaaaatatatcttgaatagaattaatcaaagcgaattaaaaagaaata--tatctatatagtactaactactaa 26912345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 13431634 - 13431786
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaa 164  Q
    |||||||||||| ||| ||||| |||||  |||||||||||| |||||||| |  |||| ||| ||| || | |||||||||||||||| ||||| | ||    
T  13431634 ttttaattattcgaaa-gtttttttcttgtattttttgttgctaaagattcattcataatcaaggttctccacaaatatattttcaatagaattattcaa 13431732  T
Q  165 accgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |   ||| ||||| | |||  ||||||||||||| || ||||||| ||| ||||||    
T  13431733 aaaaaatcaaaaataaata--tatctatataatactacctactaaataagaataat 13431786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 36066240 - 36066175
Alignment:
Q  97 tttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatt 162  Q
    ||||||||| ||||||||  |  |||| |||| || ||||||||||||||||||||| ||||||||    
T  36066240 tttttgttgtaaaagatttattcataatcaaaattctctaaaaatatattttcaatacaattaatt 36066175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 12320610 - 12320415
Alignment:
Q  22 gtcctaagagttttggtgccctggacaaaa---taaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctc 118  Q
    |||| |||| |||||||| |||| ||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |     
T  12320610 gtccgaagatttttggtgtcctgaacaaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatt 12320511  T
Q  119 tataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaa 216  Q
    ||||| | ||||||| |||||| ||||| |||||||||||||| ||||||||||||||  | |||| ||||||||| ||| |||||||||||||||||    
T  12320510 tataatcgaagttttttaaaaaaatattctcaatataattaatcaaaccgaattaaaa--agatatatatctatattatactaactactaagtaaaaa 12320415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 43515810 - 43515975
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacatttt-ttgttgcaaaagattcctctataaacaaagttttctaaaaatatatttt 148  Q
    ||||||||||||| |||||| |||||| || ||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||| |||||||| |    
T  43515810 aataaaattgtgcccttttagttattctaatagttttcttcttacatttttttgttgcaaaagattcatttataatcaaagttttctaacaatatattct 43515909  T
Q  149 caatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaa 216  Q
     |||||||||||| ||||| ||||||||  | |||| ||||||||||||| |||||| ||||||||||    
T  43515910 taatataattaatcaaaccaaattaaaa--agatatatatctatataatactaactaataagtaaaaa 43515975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 7853469 - 7853302
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||||| | |||||||||||| ||| ||||||||||||||||||||  |||||||  |||| | ||||| |||||||||||||||||||||||||    
T  7853469 aataaaattgtacccttttaattatttcaatagttttcttcttacattttta-ttgcaaagaattcatttataatcaaagttttctaaaaatatattttc 7853371  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||| |||||| |||| |||||||||    |||| |||||||||| || |||||||||||||||||||||    
T  7853370 aatatcattaatcaaactgaattaaaa--ggatatatatctatatagtactaactactaagtaaaaataat 7853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 23870189 - 23870054
Alignment:
Q  83 ttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacat 182  Q
    |||| ||||| | ||||||||||||||| |||| | ||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||  | ||    
T  23870189 tttttttcttgctttttttgttgcaaaatattcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaaaacgaattaaaa--aaat 23870092  T
Q  183 atgtatctatataatattaactactaagtaaaaataat 220  Q
    || |||||||||| || |||||||||||||||||||||    
T  23870091 atatatctatatagtactaactactaagtaaaaataat 23870054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 35372043 - 35372191
Alignment:
Q  32 ttttggtgccctggacaaaa---taaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaa 128  Q
    ||||||||||||||||||||   |||| ||||||  |||||| ||||| || | |||||||||||||||||||||||||  |||||| | |||||  |||    
T  35372043 ttttggtgccctggacaaaacaataaagttgtgccattttaaatattctaatatttttcttcttacattttttgttgcatgagattcgtttataattaaa 35372142  T
Q  129 gttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    | | ||||||||||||||||||||||||||||| |||| ||||||||||    
T  35372143 gctctctaaaaatatattttcaatataattaatcaaactgaattaaaaa 35372191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 230
Target Start/End: Original strand, 3643099 - 3643279
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||||||   ||||||||||||||| | ||||||||||  ||||||||||||| || |||| | ||| | ||||| | | ||||||||  |||||    
T  3643099 aataaaattgtgtcattttaattattccaatatttttcttcttggattttttgttgcacaaaattcatttattatcaaagctctttaaaaataacttttc 3643198  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaa--aataattttgatgtcc 230  Q
    |||||||||||| ||  | ||||||||| | |||  |||||||||| || |||||||||||||||  ||||||||||||||||    
T  3643199 aatataattaatcaatgcaaattaaaaagaaata--tatctatatagtactaactactaagtaaaataataattttgatgtcc 3643279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 5627701 - 5627539
Alignment:
Q  17 ggccagtcctaagagttttggtgccctggacaaaataa--aattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagatt 114  Q
    |||||| || |||| ||||| |||||||||| ||| ||  |||  ||| ||||||||||||| || | ||||||| || ||||||||||||||||| |||    
T  5627701 ggccagcccaaagatttttgatgccctggacgaaacaataaatcatgcccttttaattattcaaatatttttcttattgcattttttgttgcaaaatatt 5627602  T
Q  115 cctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    | | ||||| || |||| | |||||| || ||||||||||||||||| ||| |||||||||||    
T  5627601 catttataatcagagttatataaaaacattttttcaatataattaatcaaaacgaattaaaaa 5627539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 36071557 - 36071679
Alignment:
Q  96 ttttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatata 195  Q
    |||||||||||| ||||||| | ||||| ||||||| ||||||||||||||||||||  ||||||| |||   ||||||||| | |||  ||||||||||    
T  36071557 ttttttgttgcataagattcatttataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaagaaata--tatctatata 36071654  T
Q  196 atattaactactaagtaaaaataat 220  Q
     || ||||||  |||||||||||||    
T  36071655 gtactaactatcaagtaaaaataat 36071679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 55147627 - 55147735
Alignment:
Q  53 aaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaat 152  Q
    |||||||||||||||||||||||| || | ||||| | ||  ||||||||||| | ||||||| | ||||| ||||||| |||||||| | |||||||||    
T  55147627 aaaattgtgctcttttaattattctaatatttttcatattctattttttgttgtacaagattcatttataatcaaagttctctaaaaagacattttcaat 55147726  T
Q  153 ataattaat 161  Q
    | |||||||    
T  55147727 aaaattaat 55147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 29118606 - 29118532
Alignment:
Q  91 ttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaa 165  Q
    ||||||||||| |||||||| |||| |  |||| ||||||| | |||||| ||||||||||||||||||||||||    
T  29118606 ttacattttttattgcaaaatattcattcataatcaaagttctttaaaaacatattttcaatataattaattaaa 29118532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 7102284 - 7102166
Alignment:
Q  83 ttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacat 182  Q
    ||||||||||  | ||||||||||| ||||||| | |||||  |||||| ||||||||| |||||||||||  |||||| ||| | |||||||||   |     
T  7102284 ttttcttcttgtactttttgttgcacaagattcatttataataaaagttctctaaaaatgtattttcaataggattaatcaaaacaaattaaaaa---aa 7102188  T
Q  183 atgtatctatataatattaact 204  Q
    || ||||||||||||| |||||    
T  7102187 atatatctatataatactaact 7102166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 20811476 - 20811595
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattc-ctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    |||||||||||| ||   ||| |||||| ||||||| |||||||||  ||| ||| |||| |||| || | |||||||||||||||||||||| ||||||    
T  20811476 ttttaattattcgaatgttttgcttctttcatttttcgttgcaaaaacttcactc-ataatcaaaattctttaaaaatatattttcaatataaataatta 20811574  T
Q  164 aaccgaattaaaaacacatat 184  Q
    || | | ||||||||| ||||    
T  20811575 aagcaagttaaaaacaaatat 20811595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 2113980 - 2113903
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaat 161  Q
    |||||||||  ||||||| ||||||||||||  |  |||| ||| ||| | |||||| ||||||||||||||||||||    
T  2113980 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaat 2113903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 9983769 - 9983797
Alignment:
Q  133 tctaaaaatatattttcaatataattaat 161  Q
    |||||||||||||||||||||||||||||    
T  9983769 tctaaaaatatattttcaatataattaat 9983797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 29369934 - 29369978
Alignment:
Q  133 tctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||||||||||||||||||| ||||||| ||| | |||||||||    
T  29369934 tctaaaaatatattttcaatagaattaatcaaaacaaattaaaaa 29369978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 220
Target Start/End: Complemental strand, 5163953 - 5163799
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||| |||||| ||| |||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||  ||||| |||||||||||||| |    
T  5163953 ctttttattatttcaatagttttcttcttacattttttgttacaaaagattcatttataatcaaagttttctaaaataatattctcaatataattaatca 5163854  T
Q  164 aaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||||||||||||  | |||| ||| |||||| || |||||||||||||||||||||    
T  5163853 aaccgaattaaaa--agatatatatttatatagtactaactactaagtaaaaataat 5163799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 16547877 - 16547694
Alignment:
Q  15 agggccagtcctaagagttttggtgccctggacaaaa---taaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaag 111  Q
    |||| ||||||||||| |||| |||| |||||| |||   ||||||||||  ||||||||  || ||| ||||||||||||||||||||||||| |||||    
T  16547877 agggtcagtcctaagattttttgtgctctggacgaaacaataaaattgtgtccttttaatagtttcaatagttttcttcttacattttttgttgtaaaag 16547778  T
Q  112 attcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatata 195  Q
    || | | ||||| |||||||||||||||  |||||||||||||||||||| ||||| ||||||||| | |||| ||||||||||    
T  16547777 atccatttataatcaaagttttctaaaataatattttcaatataattaatcaaaccaaattaaaaaaaaatatatatctatata 16547694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 36186534 - 36186708
Alignment:
Q  23 tcctaagagttttggtgccctggacaaaa---taaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctct 119  Q
    |||||||| ||||||||||||  || |||   ||||||| ||  ||||||||||||| ||   |||||||| |||||||||||||||||||||||  | |    
T  36186534 tcctaagatttttggtgccctaaacgaaacggtaaaattttgtccttttaattattctaatgtttttcttcatacattttttgttgcaaaagatttattt 36186633  T
Q  120 ataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatat 194  Q
    |||| ||||||| ||||||||||||||||||||||||||||| |||  |||||||||| | |||| |||||||||    
T  36186634 ataatcaaagttctctaaaaatatattttcaatataattaatcaaagagaattaaaaagaaatatatatctatat 36186708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 30257734 - 30257913
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||| ||||||| ||||||| ||||  || | ||||  |||| ||||||||||| |||||||||  | ||||| ||||||| |||||||||||||||||    
T  30257734 aataagattgtgcccttttaaatattttaatattttttatcttgcattttttgtttcaaaagatttatttataatcaaagttctctaaaaatatattttc 30257833  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataa-tattaactactaagtaaaa---ataattttgatg 227  Q
    |||||||||||| |||||||||| |||| | ||||  |||||||| | ||||||||| |||||||||   ||||||||||||    
T  30257834 aatataattaatcaaaccgaattgaaaagaaatat--atctatattagtattaactattaagtaaaaaaaataattttgatg 30257913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 28556563 - 28556727
Alignment:
Q  53 aaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaat 152  Q
    |||||||||| |||||||||||| |||   |||| || ||||||||||| || | |||||||| | ||| | ||||||| | |||||||||||||| |||    
T  28556563 aaaattgtgcccttttaattatttcaatttttttttt-ttacattttttatttccaaagattcgtttatcatcaaagttctttaaaaatatatttttaat 28556661  T
Q  153 ataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||| |||||||||| |||    | ||||||||||||| || |||||||||||||||||||||    
T  28556662 ataattaatcaaaccgaatttaaa--cgaaatgtatctatatagtactaactactaagtaaaaataat 28556727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 17271259 - 17271385
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaat-taaaaacacatatgtatctata 193  Q
    ||||||| | ||| ||||||| | ||||| |||||||| |||||||||||||||||||||||||||| ||| | |||  ||||| | |||| ||||||||    
T  17271259 attttttatcgcacaagattcatttataatcaaagtttgctaaaaatatattttcaatataattaatcaaaacaaatgaaaaaatatatatatatctata 17271358  T
Q  194 taatattaactactaagtaaaaataat 220  Q
    | ||| | |||||||||||||||||||    
T  17271359 ttatactgactactaagtaaaaataat 17271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 2886979 - 2887106
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||||| |  |||||||||||| || | |||||||||| |||||||||||| | | ||||  | ||||| ||||||| ||||||||||| ||||     
T  2886979 aataaaattgtacctttttaattattctaatacttttcttcttgcattttttgttgtagatgatttatttataatcaaagttctctaaaaatattttttt 2887078  T
Q  150 aatataattaattaaaccgaattaaaaa 177  Q
    |||| ||||||| ||| |||||||||||    
T  2887079 aatagaattaatcaaaacgaattaaaaa 2887106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 37912454 - 37912341
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||| || | |||||| |||||||| |||||||||||| |||| | ||||| |||||||  | |||||||||||||||| | ||| ||| |    
T  37912454 cttttaattattcaaatatttttctccttacattgtttgttgcaaaatattcatttataatcaaagttacccaaaaatatattttcaagagaataaatca 37912355  T
Q  164 aaccgaattaaaaa 177  Q
    || |||||||||||    
T  37912354 aagcgaattaaaaa 37912341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 34346101 - 34345977
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    |||||||||||| | |||||| ||||| || | ||||||||||  ||||||||||||||||| ||| | || || |||| || | |||||||||||||||    
T  34346101 aataaaattgtgat-ttttaaatattctaatatttttcttcttgtattttttgttgcaaaag-ttcatttagaatcaaaattctataaaaatatattttc 34346004  T
Q  150 aatataattaattaaaccgaattaaaa 176  Q
    ||||||| |||| ||||| ||||||||    
T  34346003 aatataactaatcaaaccaaattaaaa 34345977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 16646927 - 16647040
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||  || | ||||||||||  ||||||||||||| ||||||| | |||||  ||| || |||||||| |||||||||||| ||||||| |    
T  16646927 cttttaattattttaatatttttcttcttttattttttgttgcacaagattcatttataattaaaattctctaaaaagatattttcaatagaattaatca 16647026  T
Q  164 aaccgaattaaaaa 177  Q
    || | |||||||||    
T  16647027 aaacaaattaaaaa 16647040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 34909269 - 34909352
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagtttt 133  Q
    ||||||||| ||  |||||||||||| ||| | |||||||||||||||||||||||||||| |||| | ||||  |||||||||    
T  34909269 aataaaattttgtccttttaattatttcaataattttcttcttacattttttgttgcaaaatattcatttatagtcaaagtttt 34909352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 35280969 - 35281055
Alignment:
Q  135 taaaaatatattttcaatataattaattaaaccgaattaaaaacaca-tatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||||||||| ||||||| ||| | | ||||||| | | |||||||||||| |||| |||||| ||||||||||||||    
T  35280969 taaaaatatattttcaatagaattaatcaaatcaagttaaaaaaataatatgtatctatacaatactaactattaagtaaaaataat 35281055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 38134207 - 38134119
Alignment:
Q  88 ttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    |||||||||||||||||||||||||||| |   |||| || ||| |||||||| ||||||| |||||||||||| ||| ||| |||||||    
T  38134207 ttcttacattttttgttgcaaaagattcattcgtaaataaggttctctaaaaa-atatttttaatataattaatcaaatcgagttaaaaa 38134119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 28148994 - 28148936
Alignment:
Q  119 tataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||| ||||||| | ||||||| ||||||||||||||||||| ||| |||||||||||    
T  28148994 tataatcaaagttctttaaaaatttattttcaatataattaatcaaaacgaattaaaaa 28148936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 38561971 - 38561849
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatat 194  Q
    ||||||||||||| || |||| | |||||  |||||| |||||||| |||||||||||  ||||||| ||| | ||||||||  | | ||||||||||||    
T  38561971 attttttgttgcacaatattcatttataatgaaagttctctaaaaaaatattttcaat-gaattaatcaaaacaaattaaaa--agaaatgtatctatat 38561875  T
Q  195 aatattaactactaagtaaaaataat 220  Q
      || |||||||||| ||||||||||    
T  38561874 tgtaataactactaaataaaaataat 38561849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 4206326 - 4206415
Alignment:
Q  83 ttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaatt 172  Q
    |||| ||||| ||||||||||||||||| |||| | |||||  |||||| ||||||| ||| |||| |||| ||||||| ||| ||||||    
T  4206326 tttttttcttgcattttttgttgcaaaatattcatttataattaaagttatctaaaagtattttttaaatagaattaatcaaagcgaatt 4206415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 36506905 - 36506994
Alignment:
Q  129 gttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||  ||||||||||| ||| ||| |||  || ||||||||| |||| |  |||||||||| |||||||||| ||||||||||    
T  36506905 gttttctaaaaacgtattttcaatagaatcaatcaaagagagttaaaaacaaatattt--ctatataatactaactactaattaaaaataat 36506994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 15925611 - 15925527
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatatttt---caatataattaattaaaccgaattaaaaa 177  Q
    |||||||||| |||||||||| || || |  ||||||||||| |||||||||||   ||||||||||||||||| ||| |||||||    
T  15925611 attttttgttacaaaagattcatc-attattaaagttttctagaaatatatttttttcaatataattaattaaagcgagttaaaaa 15925527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 28226834 - 28226868
Alignment:
Q  186 tatctatataatattaactactaagtaaaaataat 220  Q
    |||||||||||||||||||||||| ||||||||||    
T  28226834 tatctatataatattaactactaaataaaaataat 28226868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 40876964 - 40877047
Alignment:
Q  135 taaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||||||||| |||||||  || | | ||||||| | |||  ||| ||||||||| ||||||| |||||||||||||    
T  40876964 taaaaatatattttcaatagaattaatccaaacaagttaaaaagaaata--tatttatataatactaactaccaagtaaaaataat 40877047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 39769808 - 39769976
Alignment:
Q  60 tgctcttttaattattccaaaagtt-ttcttcttacatttttt-gttgcaaaagattc-ctctataaacaaagttttctaaaaatatattttcaatataa 156  Q
    ||||||||||||||||| ||| ||  ||||||||| ||||||| |||| ||||||||| ||| ||||| || ||| |||| ||| |||||||||||||||    
T  39769808 tgctcttttaattattc-aaatgtcattcttcttatatttttttgttgtaaaagattcgctc-ataaataatgttctctacaaaaatattttcaatataa 39769905  T
Q  157 ttaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaa---aataattttgatgtc 229  Q
     ||||||||  |||| |||      ||| ||| |||||| ||||| ||||||||||||   |||||||||||||||    
T  39769906 ctaattaaatggaataaaa-----gtatatatgtatatactattacctactaagtaaaactaataattttgatgtc 39769976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 15926010 - 15925950
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaa 110  Q
    ||||||||||| |  || ||||||||  || | ||||||||||||||||||||||||||||    
T  15926010 aataaaattgtacctttataattatttaaatatttttcttcttacattttttgttgcaaaa 15925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 35121865 - 35122073
Alignment:
Q  15 agggccagtcctaagagttttggtgccctggacaaaataa--aattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaaga 112  Q
    |||||||| ||||||| |||||||||||||||| ||| ||  |||| ||| ||||||||||||| || | |||||||||  |||||| |||||||||| |    
T  35121865 agggccagccctaagatttttggtgccctggacgaaacaataaattatgcccttttaattattcaaatatttttcttctagcatttt-tgttgcaaaata 35121963  T
Q  113 ttcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatata-atat-taactactaag 210  Q
    ||| | ||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||||||| | | |||| ||| |||||| |||| |||||||||||    
T  35121964 ttcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaaagcgaattaaatatatatatatatatatatatatatataactactaag 35122063  T
Q  211 taaaaataat 220  Q
    ||||||||||    
T  35122064 taaaaataat 35122073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 9815627 - 9815794
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||||||| ||||||||||||| || | | |||||||| ||||||||||| ||||| | || | ||||| || ||||||||||||||||||||||    
T  9815627 aataaaattgtgcccttttaattattctaatattattcttcttgcattttttgttacaaaa-actcatttataatcatagttttctaaaaatatattttc 9815725  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||| | ||||| ||| ||||||||||| | |||  |||||||||| ||||||||||||||||||||||||    
T  9815726 aataaagttaatcaaagcgaattaaaaagaaata--tatctatatagtattaactactaagtaaaaataat 9815794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 34573142 - 34573310
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||||||| |||| || ||||| || | ||||||| || |||| ||| ||  ||||||||| | ||||| ||||||| | |||||||||||||||    
T  34573142 aataaaattgtgccctttaaaatattcaaatatttttctttttgcattctttttt--aaaagattcatttataatcaaagttctttaaaaatatattttc 34573239  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||| ||||||| ||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||||    
T  34573240 aataaaattaatcaaaccgaattaaaaagaaatatatatctatataatattaactactaaataaaaataat 34573310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 33345033 - 33344873
Alignment:
Q  15 agggccagtcctaagagttttggtgccctggacaaaataa--aattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaaga 112  Q
    |||| ||| ||||||| |||||||||||||||| ||| ||  |||| ||| ||||||||||||| || | |||||||||  ||||||||||||||||| |    
T  33345033 agggtcagccctaagatttttggtgccctggacgaaacaataaattatgcccttttaattattcaaatatttttcttctagcattttttgttgcaaaata 33344934  T
Q  113 ttcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaatta 173  Q
    ||| | ||||| ||||||| ||||||||||||||||||||| ||||||| ||| |||||||    
T  33344933 ttcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaaagcgaatta 33344873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 12174495 - 12174327
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    |||||||||||| | ||||| ||||| ||| | ||| |||||| || |||||||| |||||||||| | || ||  |||||| ||||||||||||||||     
T  12174495 aataaaattgtgttgttttatttatttcaatattttccttcttgcagtttttgttacaaaagattcatttacaattaaagttctctaaaaatatattttt 12174396  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||||||||||| ||| ||||||||||| | |||  |||||||||| || |||||||||||||||||||||    
T  12174395 aatataattaatcaaaacgaattaaaaagaaata--tatctatatagtactaactactaagtaaaaataat 12174327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 34329777 - 34329888
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||  ||| ||||||||||||| || | |||||||||| ||||||||||||||||||||   | ||||| ||||||| |||||||||||||||||    
T  34329777 aataaaatcatgcccttttaattattctaatatttttcttcttgcattttttgttgcaaaagatctatttataagcaaagttctctaaaaatatattttc 34329876  T
Q  150 aatataattaat 161  Q
    |||| |||||||    
T  34329877 aatagaattaat 34329888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 4337556 - 4337687
Alignment:
Q  26 taagagttttggtgccctggacaaaata---aaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctata 122  Q
    ||||| |||||||| |||| ||||||||   |||||||||  |||||||||||| || || |||||||||||||||||||||| ||||||||  | ||||    
T  4337556 taagatttttggtgtcctgaacaaaataataaaattgtgccattttaattattctaatagctttcttcttacattttttgttgtaaaagatttatttata 4337655  T
Q  123 aacaaagttttctaaaaatatattttcaatat 154  Q
    | |||||||||  ||||||| ||| |||||||    
T  4337656 atcaaagtttttaaaaaatacattctcaatat 4337687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 31787952 - 31787822
Alignment:
Q  88 ttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgta 187  Q
    ||||| ||||||| ||||||||| |||| | |||||  |||||| |||| |||||||||||||||| ||||||| ||| ||||||||||| | |||  ||    
T  31787952 ttcttgcatttttagttgcaaaatattcatttataattaaagttatctacaaatatattttcaatagaattaatcaaagcgaattaaaaataaata--ta 31787855  T
Q  188 tctatataatattaactactaagtaaaaataat 220  Q
    ||||  ||||| |||||| |||||| |||||||    
T  31787854 tctacttaatactaactattaagtacaaataat 31787822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 10668849 - 10669000
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||| || | ||||||| ||  |||||||||  ||| |||||| | ||||| ||| |||| ||||||| |||||||||||||||||||| |    
T  10668849 cttttaattattctaatatttttctttttggattttttgtctcaatagattcatttataatcaacgttt-ctaaaaa-atattttcaatataattaatca 10668946  T
Q  164 aaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||  ||||| |||  | |||| ||||||||||||| |||||| ||||||||||||||    
T  10668947 aa-tgaattcaaa--agatatatatctatataatactaactaataagtaaaaataat 10669000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 32331517 - 32331616
Alignment:
Q  66 tttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaa 165  Q
    |||||||| || || | ||||||||||| ||||||||||||||||||||  | |||||| ||  || |||||||| |||||||||| | |||||||||||    
T  32331517 tttaattagtcaaatacttttcttcttatattttttgttgcaaaagatttatttataaataagattctctaaaaaaatattttcaaaagaattaattaaa 32331616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 31153630 - 31153706
Alignment:
Q  89 tcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaa 165  Q
    |||| |||||||| ||||||||||||| |  || | ||||||| | |||||| ||||||||||||||||||||||||    
T  31153630 tcttgcattttttattgcaaaagattcattcatgatcaaagttatttaaaaacatattttcaatataattaattaaa 31153706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 34540899 - 34540982
Alignment:
Q  135 taaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||||||||| || |||| ||| ||| |||| || | ||||  ||||||||| |||||| |||||||||||||||||    
T  34540899 taaaaatatattttcaatagaactaatcaaaacgagttaataagaaatat--atctatatagtattaattactaagtaaaaataat 34540982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 34969939 - 34969860
Alignment:
Q  53 aaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttt 132  Q
    ||||| |||| ||||| | |||||||| | |||||||||| |||||||||||| ||||||||| | ||||  ||||||||    
T  34969939 aaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcatttatagtcaaagttt 34969860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 11274728 - 11274617
Alignment:
Q  50 aataaaattgtgctctttt-aattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatatttt 148  Q
    |||||||||||| |||||| || ||||||||   |||| |||||  | |||||||||||||| |||| |  |||| |||| || ||||||||||| || |    
T  11274728 aataaaattgtgttctttttaactattccaatgttttttttcttgtactttttgttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgt 11274630  T
Q  149 caatataattaat 161  Q
    |||||||||||||    
T  11274629 caatataattaat 11274617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 19638396 - 19638428
Alignment:
Q  83 ttttcttcttacattttttgttgcaaaagattc 115  Q
    ||||||||||||||||||||||| |||||||||    
T  19638396 ttttcttcttacattttttgttgtaaaagattc 19638428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 9916 - 9708
Alignment:
Q  14 tagggccagtcctaagagttttggtgccctggac--aaaataaaattgtgctctttt-aattattccaa--aagttttcttcttacattttttgttgcaa 108  Q
    ||||||| || |||||| ||||| | |||||| |  ||||||||||||||| ||||| |||||||||||  |  ||||||| ||| ||||||||||| ||    
T  9916 tagggccggttctaagatttttgataccctgggcgaaaaataaaattgtgccctttttaattattccaattagtttttctttttatattttttgttgtaa 9817  T
Q  109 aagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactacta 208  Q
    ||  ||| | ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||  | |||| |||||||||| || |||||||||    
T  9816 aac-ttcatttataatcaaagttttctaaaaatatattctcaatataattaatcaaaccgaattaaaa--agatatatatctatatagtactaactacta 9720  T
Q  209 agtaaaaataat 220  Q
    | ||||||||||    
T  9719 aataaaaataat 9708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 13580286 - 13580480
Alignment:
Q  26 taagagttttggtgccctggacaaaataa--aattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataa 123  Q
    ||||| |||||||| ||||||| ||| ||  |||| || |||||||||||||| || | ||||  |||| ||||||||||||||||| |||| | |||||    
T  13580286 taagatttttggtgtcctggacgaaacaataaattatgttcttttaattattctaatattttttgtcttgcattttttgttgcaaaatattcatttataa 13580385  T
Q  124 acaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
     ||||||| | ||||||||||||||||||| ||||||| ||| ||||||||||| | |||  ||| ||||||||| |||||| ||||||||||||||    
T  13580386 ccaaagttatttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaata--tatttatataatactaactattaagtaaaaataat 13580480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 13236357 - 13236212
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||| |||  ||||||||||||||| | |||||||||| |||| |||||||||||| |||| | ||||| ||||||| |||||||||||||||||    
T  13236357 aataaaattatgccattttaattattccaatatttttcttcttgcattatttgttgcaaaaaattcgtttataatcaaagttctctaaaaatatattttc 13236258  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatata 195  Q
    | || ||||||| ||| ||||||||||| | |||| ||| ||||||    
T  13236257 attagaattaatcaaagcgaattaaaaagaaatatatatatatata 13236212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 4350622 - 4350793
Alignment:
Q  54 aaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaa----caaagttttctaaaaatatattttc 149  Q
    ||||||| | ||||||||||||  || | |||| ||||| |||||||||||| |||| |||| | |||| |    ||||||| | |||||||||||||||    
T  4350622 aaattgtacccttttaattattttaatattttttttcttgcattttttgttgaaaaatattcgtttatatataatcaaagttatataaaaatatattttc 4350721  T
Q  150 aatataattaattaaaccgaattaaaaacacat-atgtatctatataatattaactactaagtaaaaataat 220  Q
    |||| ||||||  ||| ||||||||||| | || || ||||||||||||| |||||||||| ||||||||||    
T  4350722 aatagaattaaccaaagcgaattaaaaaaaaataatatatctatataatactaactactaaataaaaataat 4350793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 22930446 - 22930331
Alignment:
Q  100 ttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatat 199  Q
    |||||| |||| |||| | ||||| ||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||  | |||| |||||||||| ||     
T  22930446 ttgttgtaaaatattcatttataatcaaagttatctaaaaatattttttcaatagaattaatcaaagcgaattaaaa--agatatatatctatatagtac 22930349  T
Q  200 taactactaagtaaaaat 217  Q
    |||||| |||||||||||    
T  22930348 taactattaagtaaaaat 22930331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 26835593 - 26835716
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatat 194  Q
    ||||||||||||| ||||||| | ||||| ||||||| ||||||||||||||||||||| ||||||| |||   ||||||||| | |||  ||| |||||    
T  26835593 attttttgttgcacaagattcatttataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaagaaata--tatttatat 26835690  T
Q  195 aatattaactactaagtaaaaataat 220  Q
      || |||||| ||||||||||||||    
T  26835691 tgtactaactattaagtaaaaataat 26835716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 43872679 - 43872558
Alignment:
Q  53 aaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaat 152  Q
    |||||||| | ||||||||||||| || | ||||||| ||  ||||||||||||| ||||||| | ||||| ||||||| | ||||||||||||| ||||    
T  43872679 aaaattgtacccttttaattattctaatatttttctttttgtattttttgttgcacaagattcatttataatcaaagttctttaaaaatatatttacaat 43872580  T
Q  153 ataattaattaaaccgaattaa 174  Q
    | ||||||| ||| | ||||||    
T  43872579 agaattaatgaaagcaaattaa 43872558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 34142124 - 34142031
Alignment:
Q  125 caaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||| ||| ||||||||||||||||| ||||||| ||| || |||||||| | |||  |||||||||| || |||||||||| ||||||||||    
T  34142124 caaagttatctgaaaatatattttcaatagaattaatcaaagcggattaaaaagaaata--tatctatatagtactaactactaaataaaaataat 34142031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 9191331 - 9191207
Alignment:
Q  88 ttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgta 187  Q
    ||||| |||| ||||||| ||||||||| | ||||| || |||| |||||||||||||||| |||| ||||||| |||  |||||||||| | |||  ||    
T  9191331 ttcttgcattatttgttgtaaaagattcatttataatcatagttctctaaaaatatattttgaatagaattaatcaaagtgaattaaaaataaata--ta 9191234  T
Q  188 tctatataatattaactactaagtaaaaataat 220  Q
    ||||||      |||||||||||||||||||||    
T  9191233 tctata------taactactaagtaaaaataat 9191207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 24606912 - 24606832
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaa 165  Q
    ||||||||||||||||||| |||||||||||| | |||||| |||||| | |||||| |||||||||| | || ||||||||    
T  24606912 tttcttcttacattttttgctgcaaaagattcatttataaataaagttctttaaaaa-atattttcaacagaactaattaaa 24606832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 9053017 - 9052871
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccga-at-taaaaacaca 181  Q
    |||||| | ||||||||||||| |||||| || |  |||| ||| ||| |||||| |||||||||||||| ||||||||||| ||| || || | | | |    
T  9053017 tttcttttcacattttttgttgtaaaagaatcattcataatcaaggttctctaaatatatattttcaata-aattaattaaagcgatatatatatatata 9052919  T
Q  182 tatgtatctatataatattaactactaagt--aaaaataattttgatg 227  Q
    ||| ||| |||||| |||||||||||||||  ||||||||||||||||    
T  9052918 tatatatatatatattattaactactaagtaaaaaaataattttgatg 9052871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 35480989 - 35481066
Alignment:
Q  83 ttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatat-attttcaatataatta 159  Q
    ||||||||||  ||||||||||||||||||||  | ||||| ||| ||| ||||||||||| |||||||||| |||||    
T  35480989 ttttcttcttgtattttttgttgcaaaagatttttttataatcaatgttctctaaaaatatcattttcaatagaatta 35481066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 22486596 - 22486676
Alignment:
Q  97 tttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||| ||||| ||||||| | ||||| ||||||| |||||||  |||||||||||| ||||||| ||| | |||||||||    
T  22486596 ttttttttgcacaagattcatttataatcaaagttctctaaaatgatattttcaatagaattaatcaaaacaaattaaaaa 22486676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 26802019 - 26801916
Alignment:
Q  57 ttgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataa 156  Q
    |||||| ||||||||||||  ||   ||||||| ||| ||||||||||||||| || || | ||||| ||| ||| ||||| |||||| |||||||||||    
T  26802019 ttgtgcccttttaattatttgaatgtttttcttattaaattttttgttgcaaaggactcgtttataatcaatgttctctaataatata-tttcaatataa 26801921  T
Q  157 ttaat 161  Q
    |||||    
T  26801920 ttaat 26801916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 28376754 - 28376664
Alignment:
Q  127 aagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||| ||||||||||||||| | | | | ||||| ||| ||||||||||| | ||||  ||||||||| || |||||||||||||||||||||    
T  28376754 aagttatctaaaaatatattt-cgacaaatttaatcaaaacgaattaaaaagaaatat--atctatatagtactaactactaagtaaaaataat 28376664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 18987200 - 18987241
Alignment:
Q  125 caaagttttctaaaaatatattttcaatataattaattaaac 166  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  18987200 caaagttctctaaaaatataatttcaatataattaatcaaac 18987241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 32257639 - 32257808
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||| ||||| ||||||||||||||||   |||| ||||| ||||||||||| || || |||| | ||||| ||||||| ||||||| |||||||||    
T  32257639 aataaaactgtgcccttttaattattccaatttttttgttcttgcattttttgttacacaaaattcatttataatcaaagttctctaaaagtatattttc 32257738  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataatt 221  Q
    |||| ||||||| ||| | ||||||||| | |||  ||||||| ||||| ||||||||||||||||||||||    
T  32257739 aataaaattaatcaaagcaaattaaaaaaaaata--tatctatgtaatactaactactaagtaaaaataatt 32257808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 10325554 - 10325681
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttac---attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatatt 146  Q
    ||||||||||||| |||||||||||||| | ||||||  || |||    |||||||||||||||||||| | ||| | ||||||||||||||||| ||||    
T  10325554 aataaaattgtgcccttttaattattccgatagttttaatcctacttttttttttgttgcaaaagattcatttatgatcaaagttttctaaaaatgtatt 10325653  T
Q  147 ttcaatataattaattaaaccgaattaa 174  Q
     |||||||||||||| ||||||||||||    
T  10325654 ctcaatataattaatcaaaccgaattaa 10325681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 12263638 - 12263770
Alignment:
Q  88 ttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgta 187  Q
    ||||| ||| |||| ||||||||||||| ||||||| ||||||| | ||||||||||||||||||| ||||||| ||| ||||||||||| | | |  ||    
T  12263638 ttcttgcatcttttattgcaaaagattcatctataatcaaagttctttaaaaatatattttcaatagaattaatcaaagcgaattaaaaaaaaaaaaata 12263737  T
Q  188 tctatataatattaactactaagtaaaaataat 220  Q
    |||||||| || |||| | ||||||||||||||    
T  12263738 tctatatagtactaaccattaagtaaaaataat 12263770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 7886571 - 7886693
Alignment:
Q  54 aaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaata 153  Q
    |||||||||  |||||||||||| || | |||||||||||| ||||||||| ||||| ||||   ||||| ||||||| |||||| ||||||||||||||    
T  7886571 aaattgtgccattttaattattcaaacatttttcttcttac-ttttttgttccaaaatattcacttataatcaaagttatctaaacatatattttcaata 7886669  T
Q  154 taattaattaaaccgaattaaaaa 177  Q
     ||||||| ||| |||||||||||    
T  7886670 gaattaatcaaagcgaattaaaaa 7886693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 25034322 - 25034433
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaa 164  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||| |||| | ||| |  ||||||||||||||||| ||||| |||| ||||||| ||    
T  25034322 ttttaattacttcaatagttttcttcttacattttttgttgcaaaaaattcatttattattaaagttttctaaaaatacatttttaatacaattaatcaa 25034421  T
Q  165 accgaattaaaa 176  Q
    ||| | ||||||    
T  25034422 accaatttaaaa 25034433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 502931 - 502812
Alignment:
Q  96 ttttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatata 195  Q
    |||||| ||||||||||||| |  |||| ||||||| ||||||||||||||||||||| ||||||| |||  || ||||||| | |||  ||||||||||    
T  502931 tttttttttgcaaaagattcattcataatcaaagttctctaaaaatatattttcaatagaattaatcaaa--gagttaaaaagaaata--tatctatata 502836  T
Q  196 atattaactactaagtaaaaataat 220  Q
    ||| ||||| |||||||||||||||    
T  502835 atactaact-ctaagtaaaaataat 502812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 20870772 - 20870678
Alignment:
Q  83 ttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    |||| ||||| |||||||||||||| || |||| | ||||| ||||||| |||||||||||||| |||||| ||||||| |||  ||||||||||    
T  20870772 tttttttcttgcattttttgttgcagaatattcatttataatcaaagttatctaaaaatatattatcaataaaattaatcaaagggaattaaaaa 20870678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 3193510 - 3193585
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataatta 159  Q
    ||||||||| |||||||| ||||||||||||| |  |||| ||||||| | |||||| ||||||||||||||||||    
T  3193510 tttcttcttgcattttttattgcaaaagattcattcataatcaaagttctttaaaaacatattttcaatataatta 3193585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 16570450 - 16570618
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||| |||  || |||||||| ||| | |||| || || |||||| ||| ||||||||||  | | ||| ||||||| ||||||||||||||||     
T  16570450 aataaaattatgccattctaattatttcaatatttttgtttttgcattttctgtggcaaaagattaatttttaatcaaagttctctaaaaatatattttt 16570549  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    |||| ||||||| |||  |||||||||| | |||  |||||||||  ||  ||||| ||||||||||||||    
T  16570550 aatagaattaatcaaagtgaattaaaaagaaata--tatctatatggtaccaactaataagtaaaaataat 16570618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 3596879 - 3596993
Alignment:
Q  63 tcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatt 162  Q
    |||||||||||||| || | |||| || ||| ||||||| || ||||||||||   ||||  |||| |||| |||||||||||||| |||| |||||||     
T  3596879 tcttttaattattctaatacttttatttttatattttttttttcaaaagattcacttatattcaaatttttataaaaatatatttttaatagaattaatc 3596978  T
Q  163 aaaccgaattaaaaa 177  Q
    ||| |||||||||||    
T  3596979 aaaacgaattaaaaa 3596993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 18626788 - 18626722
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaat 161  Q
    ||||||||||||| ||||||| | ||||| ||||||| || |||||||| | ||||||| |||||||    
T  18626788 attttttgttgcacaagattcatttataatcaaagttctcaaaaaatatttcttcaatagaattaat 18626722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 18600292 - 18600251
Alignment:
Q  120 ataaacaaagttttctaaaaatatattttcaatataattaat 161  Q
    |||| ||||||| |||||||| ||||||||||||||||||||    
T  18600292 ataatcaaagttctctaaaaacatattttcaatataattaat 18600251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 1240637 - 1240434
Alignment:
Q  22 gtcctaagagttttggtgccctggacaaaa---taaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctc 118  Q
    ||||||||| | |||||||| ||||| |||   ||||||||||| ||||||||||| |  | | |||||||||| |||||||||||||||||||||| |     
T  1240637 gtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctgatatttttcttcttgcattttttgttgcaaaagattcatt 1240538  T
Q  119 tataaacaaagttttct----aaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaa 214  Q
    ||||| | ||||| |||    |||||||||||||||||| ||||||| ||| || |||||||| | |||  ||| |||||| || |||||||||||||||    
T  1240537 tataatcgaagttctctaaaaaaaaatatattttcaatagaattaatcaaagcggattaaaaagaaata--tatttatatagtactaactactaagtaaa 1240440  T
Q  215 aataat 220  Q
    ||||||    
T  1240439 aataat 1240434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 35405497 - 35405366
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||| || | |||||||||| ||||||||||||||||| |||| | | ||| ||||||| ||||||||||| |||| |||||||||||| |    
T  35405497 cttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttctaatcaaagttatctaaaaatattttttaaatataattaatca 35405398  T
Q  164 aaccgaattaaaaacacatatgtatctatata 195  Q
    || ||||||||||| | |||| ||| ||||||    
T  35405397 aagcgaattaaaaagaaatatatatatatata 35405366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 33735699 - 33735831
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgtt-----gcaaaagattcctctataaacaaagttttctaaaaatata 144  Q
    ||||||||||||| ||||||||||||  || |||||||||||    |||||| ||     ||||||||||| | ||||| ||||||| ||||||||||||    
T  33735699 aataaaattgtgcccttttaattattttaatagttttcttctcgtttttttttttttttggcaaaagattcatttataatcaaagttgtctaaaaatata 33735798  T
Q  145 ttttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||||||||||||||| ||||| |||||||||    
T  33735799 ttttcaatataattaatcaaaccaaattaaaaa 33735831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 22667113 - 22667260
Alignment:
Q  15 agggccagtcctaagagttttggtgccctggacaaaata-aaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagat 113  Q
    ||||||||| |||||| |||||||||| |||| |||  | ||||| | | ||||||||||||| || | |||||||||| |||||||| |||||||| ||    
T  22667113 agggccagttctaagatttttggtgccatggagaaacaataaattatacccttttaattattcaaatatttttcttcttgcattttttattgcaaaatat 22667212  T
Q  114 tcctctataaacaaagttttctaaaaatatattttcaatataattaat 161  Q
    || | ||||| ||||||| || ||||||| |||||||||| |||||||    
T  22667213 tcatttataatcaaagttatccaaaaataaattttcaatagaattaat 22667260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 49762370 - 49762515
Alignment:
Q  18 gccagtcctaagagttttggtgccctggacaaaa---taaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagatt 114  Q
    |||| |||||||| ||||| |||| ||||| |||   ||||||||||   |||||||||||| || | ||||||||||| |||||||||| || || | |    
T  49762370 gccaatcctaagatttttgatgccttggacgaaacaataaaattgtgtctttttaattattctaata-ttttcttcttatattttttgttacacaaaact 49762468  T
Q  115 cctctataaacaaagttttctaaaaatatattttcaatataattaat 161  Q
    | | ||||| ||||||| ||||||||||||||||||||| |||||||    
T  49762469 catttataatcaaagttctctaaaaatatattttcaatagaattaat 49762515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 23897827 - 23897982
Alignment:
Q  26 taagagttttggtgccctggacaaaataa--aattgtgctcttttaatt-attccaaaagttttcttcttacatttt--ttgttgcaaaagattcctcta 120  Q
    ||||| ||||| |||||||| ||||| ||  |||||||| ||||||||| |||| || | |||||||||| ||||||  ||||||||||| |||| | ||    
T  23897827 taagatttttgttgccctgggcaaaacaataaattgtgcccttttaatttattcaaatatttttcttcttgcattttttttgttgcaaaatattcattta 23897926  T
Q  121 taaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||| ||||||| ||||||||||| |||| |||| ||||||| ||| | |||||||||    
T  23897927 taatcaaagttatctaaaaatat-ttttaaatagaattaatcaaagcaaattaaaaa 23897982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 10976110 - 10976179
Alignment:
Q  88 ttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataat 157  Q
    |||||||||||||| ||| ||||||||  | ||||| ||||||||| |||||||||||||||||||||||    
T  10976110 ttcttacattttttattgtaaaagatttatttataatcaaagttttataaaaatatattttcaatataat 10976179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 8246671 - 8246842
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgc--aaaagattcctctataaacaaagttttct---aaaaatata 144  Q
    |||||||||||| |||| |||||| ||||| |  ||| |||||| ||||||||||||  | ||||||| | |||||  |||||| | |   |||||||||    
T  8246671 aataaaattgtgttcttctaattactccaata--ttttttcttatattttttgttgcatataagattcatttataattaaagttctataaaaaaaatata 8246768  T
Q  145 ttttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||| ||||||| ||| | ||||||||| | |||  |||||||||| || |||||| ||||||||||||||    
T  8246769 ttttcaatagaattaatcaaatcaaattaaaaagaaata--tatctatatagtactaactattaagtaaaaataat 8246842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 29062320 - 29062431
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    ||||||||  |||||||||||||| ||||| |  |||||||||  ||||||||||||||||||||  | |||||  |||||| ||||| ||||||||||     
T  29062320 aataaaataatgctcttttaattactccaatatatttcttcttgtattttttgttgcaaaagatttatttataataaaagttctctaacaatatatttta 29062419  T
Q  150 aatataattaat 161  Q
    |||  |||||||    
T  29062420 aattgaattaat 29062431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 1153713 - 1153846
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacata 183  Q
    ||||||||| | |||||||||||||||||||  |  | || ||||||| ||| |||| ||||||| |||| |||||||||||  || ||||||||| |||    
T  1153713 tttcttcttgcgttttttgttgcaaaagattaattgaaaatcaaagttctcttaaaacatatttttaatagaattaattaaa-ggagttaaaaacaaata 1153811  T
Q  184 tgtatctatataatattaactactaagtaaaaataat 220  Q
      || |||| ||||| |||||||||| ||||||||||    
T  1153812 --taactatttaatactaactactaaataaaaataat 1153846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 15103005 - 15103112
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    |||||||||||| ||||||||||||| ||| | ||||||| |   ||||||||||||| ||||||| | ||||| ||||||| |||||||||||   |||    
T  15103005 aataaaattgtgttcttttaattatttcaata-ttttcttgt---attttttgttgcacaagattcatttataatcaaagttctctaaaaatattacttc 15103100  T
Q  150 aatataattaat 161  Q
    |||| |||||||    
T  15103101 aatagaattaat 15103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 35204172 - 35204337
Alignment:
Q  50 aataaaattgtgctctttt-aattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatatttt 148  Q
    |||||||||||| |||||| |||||||||||   |||| |||||  | ||||| |||||||| |||| |  |||| |||| || ||||||||||| || |    
T  35204172 aataaaattgtgttctttttaattattccaatgttttttttcttgtactttttattgcaaaatattcattcataatcaaaattctctaaaaatat-ttgt 35204270  T
Q  149 caatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||| ||| | | |||||||     || | | ||||||||| ||| |||||||||||||||||    
T  35204271 caatataattaatcaaagcaatttaaaaa-----atatttttatataatactaattactaagtaaaaataat 35204337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 30717931 - 30717897
Alignment:
Q  186 tatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||||||| |||||||||||||||||    
T  30717931 tatctatataatattaattactaagtaaaaataat 30717897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 35384135 - 35384224
Alignment:
Q  126 aaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaa 216  Q
    |||||| ||||||||||||||| ||||||||||||| |||   ||||||||| | |||| ||| |||||| ||||  ||||||| ||||||    
T  35384135 aaagttctctaaaaatatatttgcaatataattaatcaaagataattaaaaaaatatatatat-tatatagtattgcctactaaataaaaa 35384224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 35383783 - 35383859
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaata 142  Q
    |||||||||||| || |  ||||| |||||||||| ||||||||||| ||| | ||||| ||||||| ||||||||||    
T  35383783 ttttaattattctaatatatttctacttacatttt-tgttgcaaaagtttcatttataatcaaagttctctaaaaata 35383859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 4626564 - 4626612
Alignment:
Q  129 gttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||| ||||||||||||||||||| ||||||| |||  ||||||||||    
T  4626564 gttttttaaaaatatattttcaatagaattaatcaaagagaattaaaaa 4626612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 15671045 - 15670925
Alignment:
Q  98 ttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataat 197  Q
    |||||||||| ||||||| | ||||| |||||||||||||||| |||||||||||| ||||||| ||| | ||||||||| | |||  |||||||||  |    
T  15671045 ttttgttgcacaagattcatttataatcaaagttttctaaaaagatattttcaatagaattaatcaaaacaaattaaaaagaaata--tatctatattgt 15670948  T
Q  198 attaactactaagtaaaaataat 220  Q
    | |||||||||||||||||||||    
T  15670947 aataactactaagtaaaaataat 15670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 33510096 - 33510234
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatat 194  Q
    ||||||||||||||||||||| | |||||  |||||| ||||||||||||||||||||  ||||||| ||| ||||||||||| | |||  ||||||| |    
T  33510096 attttttgttgcaaaagattcatttataattaaagttctctaaaaatatattttcaatggaattaatcaaaacgaattaaaaagaaata--tatctatgt 33510193  T
Q  195 aatattaactactaagtaaa---aataattttgatgtccat 232  Q
    |  | |||||||||||||||   ||||||||||||||||||    
T  33510194 agcactaactactaagtaaaaataataattttgatgtccat 33510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 11383724 - 11383598
Alignment:
Q  94 cattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctata 193  Q
    ||||||||||||||||| |||| | ||||| ||||||| ||||||||||| ||||||||  ||||||| ||| ||||||||| | | |||| ||| ||||    
T  11383724 cattttttgttgcaaaatattcatttataatcaaagttatctaaaaatattttttcaattgaattaatcaaagcgaattaaagatatatatatatatata 11383625  T
Q  194 taatattaactactaagtaaaaataat 220  Q
    || || |||||||||| ||||||||||    
T  11383624 tattactaactactaaataaaaataat 11383598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 47000793 - 47000946
Alignment:
Q  25 ctaagagttttggtgccctggacaaaa-ta-aaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctata 122  Q
    |||||| |||||||| | ||||||||| || ||||||||| |||||||| |||  || | ||||||||||| |||||||||||||||| |||| | ||||    
T  47000793 ctaagatttttggtgtcatggacaaaactataaattgtgcccttttaatcatttaaatatttttcttcttatattttttgttgcaaaatattcatttata 47000892  T
Q  123 aacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    | |||| || ||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  47000893 atcaaaattatctaaaaatat-ttttcaatagaattaatcaaagcgaattaaaaa 47000946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 11365208 - 11365100
Alignment:
Q  64 cttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaatta 163  Q
    ||||||||||||| || | |||||||||| ||||||||||||||||| |||| | ||||| ||||||| | ||||||||| ||||||||  ||||||| |    
T  11365208 cttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttataatcaaagttatttaaaaatatcttttcaattgaattaatca 11365109  T
Q  164 aaccgaatt 172  Q
    || ||||||    
T  11365108 aagcgaatt 11365100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 27538784 - 27538866
Alignment:
Q  95 attttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    |||||||||||||||| |||| | | ||| ||||||| | ||||||||||||||||||| ||||||| |||  ||||||||||    
T  27538784 attttttgttgcaaaatattcatttctaatcaaagttatttaaaaatatattttcaatagaattaatcaaagagaattaaaaa 27538866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 33682616 - 33682780
Alignment:
Q  50 aataaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttc 149  Q
    |||||| |||||| ||||||||| ||| ||    ||||||||  ||||| ||||| |||||||||||| ||||  ||| ||| | |||||| |||||||     
T  33682616 aataaagttgtgcccttttaatttttcgaatgtctttcttctagcatttgttgttacaaaagattcctttatagtcaaggttctttaaaaaaatattttt 33682715  T
Q  150 aatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaa 216  Q
    |||| ||||||| |||  |||||||||| | |||  ||||||| || || |||||| ||||||||||    
T  33682716 aatagaattaatcaaagtgaattaaaaagaaata--tatctatctagtactaactattaagtaaaaa 33682780  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 18257924 - 18258008
Alignment:
Q  138 aaatatattttcaatataattaattaaaccgaattaaaaacaca--tatgtatctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||| |||||||||||| ||| | | ||||||| |||  ||| ||| ||||||||| |||||| ||||||||||||||    
T  18257924 aaatatatttttaatataattaatcaaaactagttaaaaaaacaaatatatatgtatataatactaactattaagtaaaaataat 18258008  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 33290858 - 33290750
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaa 164  Q
    ||||||||||| ||| | |||||| ||| | |||||||||||| ||||||| | ||| | ||||||| ||||||||||||  ||||||| ||||||| ||    
T  33290858 ttttaattatttcaatatttttctccttgcgttttttgttgcacaagattcatttatgatcaaagttctctaaaaatata-attcaataaaattaatcaa 33290760  T
Q  165 accgaattaa 174  Q
    | | ||||||    
T  33290759 agcaaattaa 33290750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 32286011 - 32286062
Alignment:
Q  126 aaagttttctaaaaatatattttcaatataattaattaaaccgaattaaaaa 177  Q
    ||||||||||||||||||| ||| |||| ||||||||||| ||| |||||||    
T  32286011 aaagttttctaaaaatatagttttaataaaattaattaaagcgagttaaaaa 32286062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 19149892 - 19149971
Alignment:
Q  138 aaatatattttcaatataattaattaaaccgaattaaaaacacatatgtatctatataatattaactactaagtaaaaataa 219  Q
    |||||||||||| ||||||||||| ||| ||||||||||| | |||  ||| |||| | ||||||||| ||| |||||||||    
T  19149892 aaatatattttcgatataattaatcaaagcgaattaaaaagaaata--tatttataaattattaactattaaataaaaataa 19149971  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 168674 - 168750
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaat 161  Q
    |||||| || ||||||||||| |||||||||| |  |||| ||| ||| ||||||| ||||||||||||| |||||||    
T  168674 tttcttgttgcattttttgttacaaaagattcattcataatcaaggttctctaaaa-tatattttcaatagaattaat 168750  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 52704608 - 52704684
Alignment:
Q  53 aaaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaag 129  Q
    |||||||||| ||||||||||||| || | ||||| | ||  ||||||||||||| ||||||| | ||||| |||||    
T  52704608 aaaattgtgcccttttaattattctaatatttttcattttgtattttttgttgcacaagattcatttataatcaaag 52704684  T

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Target: scaffold0527 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 1805 - 1705
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaa 164  Q
    ||||||||||| ||| | |||||||||| |||||||| ||||||||||||  | ||||| ||||||| ||||||||||||||||||||| ||||| ||||    
T  1805 ttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctctaaaaatatattttcaataaaattagttaa 1706  T
Q  165 a 165  Q
    |    
T  1705 a 1705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 9868 - 9768
Alignment:
Q  65 ttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaa 164  Q
    ||||||||||| ||| | |||||||||| |||||||| ||||||||||||  | ||||| ||||||| ||||||||||||||||||||| ||||| ||||    
T  9868 ttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctctaaaaatatattttcaataaaattagttaa 9769  T
Q  165 a 165  Q
    |    
T  9768 a 9768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 499 - 388
Alignment:
Q  54 aaattgtgctcttttaattattccaaaagttttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaata 153  Q
    ||||||||| | ||||||||||| || | |||||||||| |||||||| ||| |||| |||  | ||||| ||||||| ||||||||||| ||||||||     
T  499 aaattgtgcccctttaattattcaaatatttttcttcttgcattttttattgtaaaatattaatttataatcaaagttatctaaaaatattttttcaatt 400  T
Q  154 taattaattaaa 165  Q
     |||||||||||    
T  399 gaattaattaaa 388  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 47628 - 47547
Alignment:
Q  84 tttcttcttacattttttgttgcaaaagattcctctataaacaaagttttctaaaaatatattttcaatataattaattaaa 165  Q
    ||||||| | ||||| ||||||||| | |||| |  |||  |||||||| ||| |||||||||||||||| |||||||||||    
T  47628 tttcttcatgcatttgttgttgcaagaaattcattcatattcaaagtttgctacaaatatattttcaataaaattaattaaa 47547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 46866 - 46834
Alignment:
Q  188 tctatataatattaactactaagtaaaaataat 220  Q
    ||||||||||||||| |||||||||||||||||    
T  46866 tctatataatattaaatactaagtaaaaataat 46834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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