View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_252 (Length: 242)
Name: NF10233A_low_252
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_252 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 49123387 - 49123539
Alignment:
| Q |
1 |
aatttattttcaaaattaaaaccaccctaagttcatgacgtaattgaattcaatgagggggtccaattgaaactatatctaagatatgattgttttgaaa |
100 |
Q |
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| T |
49123387 |
aatttattttcaaaattaaaaccaccctaagttcatgacgtaattgaattcaatgagggggtccaattgaaacaatatctaagatatgattgttttgaaa |
49123486 |
T |
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| Q |
101 |
gcttagcaagtagcaacatgtcaaaccaatgcatatgcggtgaaataatatta |
153 |
Q |
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| T |
49123487 |
gcttagcaagtagcaacatgtcaaaccaatgcatatgcggtgaaataatatta |
49123539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 49123778 - 49123856
Alignment:
| Q |
152 |
taataacaagtttagttggcattaccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgt |
230 |
Q |
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| T |
49123778 |
taataacaagtttagttggcattaccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgt |
49123856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 4271743 - 4271687
Alignment:
| Q |
174 |
taccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgt |
230 |
Q |
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| T |
4271743 |
taccatctaaaagatactctggggcaacataccccaatgtgcctgaaagcttgatgt |
4271687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 2808087 - 2808031
Alignment:
| Q |
174 |
taccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgt |
230 |
Q |
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| T |
2808087 |
taccatctaaaagatactccggggcaacataccccaatgtgcctgaaagcttgatgt |
2808031 |
T |
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