View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_253 (Length: 242)
Name: NF10233A_low_253
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_253 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 22837787 - 22837942
Alignment:
| Q |
18 |
agcagagaatggaagttcttggaaagttaagacactccaacattgttagcttaaaggcttattattttgcaagggatgaaaaattgcttgtctttgatta |
117 |
Q |
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| T |
22837787 |
agcagagaatggaaattcttggaaagttaaaacactccaacattgttagcttaaaggcttattattttgcaagggatgaaaaattgcttgtctttgatta |
22837886 |
T |
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| Q |
118 |
catggttaatggtagcttgttttggcttcttcatggtatgatttcttttctttctc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22837887 |
catggttaatggtagcttgttttggcttcttcatggtatgatttcttttctttctc |
22837942 |
T |
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