View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_256 (Length: 241)
Name: NF10233A_low_256
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_256 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 6942816 - 6943020
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcactatcgcgtctctctaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
6942816 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgactccataggttttcgctatcgcgtctctctaaa |
6942915 |
T |
|
| Q |
117 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942916 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
6943015 |
T |
|
| Q |
217 |
caaca |
221 |
Q |
| |
|
||||| |
|
|
| T |
6943016 |
caaca |
6943020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 5597531 - 5597736
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggtttt-cagtgctggttatccagttacagaagcgaccccataggttttcactatcgcgtctctctaa |
115 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |
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| T |
5597531 |
catcaaaacactaaaccatccactgtaaagacgatttttcagtgttggttatccagttacagaagtgaccctataggttttcgctatcgcgtctctctaa |
5597630 |
T |
|
| Q |
116 |
aattgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5597631 |
aattgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacactaattctctataagtatagaattaagggcttgttat |
5597730 |
T |
|
| Q |
216 |
tcaaca |
221 |
Q |
| |
|
|||||| |
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|
| T |
5597731 |
tcaaca |
5597736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 18031049 - 18031253
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcactatcgcgtctctctaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
18031049 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcgctatcgcctctctctaaa |
18031148 |
T |
|
| Q |
117 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18031149 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
18031248 |
T |
|
| Q |
217 |
caaca |
221 |
Q |
| |
|
||||| |
|
|
| T |
18031249 |
caaca |
18031253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 18304270 - 18304066
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcactatcgcgtctctctaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
18304270 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgactccataggttttcgctatcgcgtctctctaaa |
18304171 |
T |
|
| Q |
117 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18304170 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
18304071 |
T |
|
| Q |
217 |
caaca |
221 |
Q |
| |
|
||||| |
|
|
| T |
18304070 |
caaca |
18304066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 37873684 - 37873888
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcactatcgcgtctctctaaa |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
37873684 |
catcaaaacacaaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcgctatcgcctctctctaaa |
37873783 |
T |
|
| Q |
117 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37873784 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
37873883 |
T |
|
| Q |
217 |
caaca |
221 |
Q |
| |
|
||||| |
|
|
| T |
37873884 |
caaca |
37873888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 201284 - 201488
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgaccccataggttttcactatcgcgtctctctaaa |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| || ||| ||||||||||||||| |
|
|
| T |
201284 |
catcaaaacaccgaaccatccgatgtaaagacgattttcagtgctagttatccagttgcagaagcgaccccacaggcttgtactttcgcgtctctctaaa |
201383 |
T |
|
| Q |
117 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
201384 |
attgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagcacacgaattctctataagtatagaattaagggcttgttatt |
201483 |
T |
|
| Q |
217 |
caaca |
221 |
Q |
| |
|
|||| |
|
|
| T |
201484 |
taaca |
201488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 25175133 - 25175204
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacagaagcgacccca |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25175133 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgttggttatccagttacagaagcggcccca |
25175204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 38651307 - 38651367
Alignment:
| Q |
17 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38651307 |
catcaaaacaccaaaccatccaatgtaaagacggttttcagtgctggttatccagttacag |
38651367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 14842510 - 14842575
Alignment:
| Q |
111 |
tctaaaattgcagtcatggtaaaatcttgggtttatttaaatttaattatcagggactcccaagca |
176 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
14842510 |
tctaaaactgcagtcatggtaaaatgttggttttatttaaatttaattatcaaggattcccaagca |
14842575 |
T |
|
Back To:
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