View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_26 (Length: 416)
Name: NF10233A_low_26
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 33498967 - 33499377
Alignment:
| Q |
1 |
tggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498967 |
tggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
33499066 |
T |
|
| Q |
101 |
ttctcttctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499067 |
ttctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaa |
33499166 |
T |
|
| Q |
201 |
cttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tccta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
33499167 |
cttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttccga |
33499266 |
T |
|
| Q |
300 |
tcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgttcgcttttccaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
33499267 |
tcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttctaat |
33499366 |
T |
|
| Q |
400 |
attgtaaactg |
410 |
Q |
| |
|
||||||||||| |
|
|
| T |
33499367 |
attgtaaactg |
33499377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33485756 - 33485867
Alignment:
| Q |
1 |
tggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485756 |
tggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
33485855 |
T |
|
| Q |
101 |
ttctcttctctt |
112 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
33485856 |
ttctctcctctt |
33485867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
109 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaag |
208 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||| || |||||| || ||| ||||||| |||||| |
|
|
| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
|
| Q |
209 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
263 |
Q |
| |
|
|| || ||| ||||||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 33486210 - 33486284
Alignment:
| Q |
324 |
ctttgatggtcctatgagacatttt-atggtgtttaaactag-ttaaattatttgctttttgtgttcgcttttcc |
396 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||| || |||||| ||||||||||||| |||||||| |
|
|
| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University