View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_264 (Length: 240)
Name: NF10233A_low_264
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_264 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 87364 - 87602
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
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| T |
87364 |
atgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
87463 |
T |
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| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87464 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
87563 |
T |
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| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagac |
239 |
Q |
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| T |
87564 |
tagagttgaagctataagatatatggctaatcatgagac |
87602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 95394 - 95618
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
95394 |
atgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccagaag |
95479 |
T |
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| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
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| T |
95480 |
ttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatg |
95579 |
T |
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| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagac |
239 |
Q |
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| T |
95580 |
tagagttgaagatataagatatatggctaatcatgagac |
95618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40878919 - 40878681
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878919 |
atgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
40878820 |
T |
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| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878819 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
40878720 |
T |
|
| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40878719 |
tagagttgaagctataagatatatggctaatcatgagac |
40878681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40870888 - 40870664
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
40870888 |
atgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccagaag |
40870803 |
T |
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| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
40870802 |
ttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatg |
40870703 |
T |
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| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagac |
239 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
40870702 |
tagagttgaagatataagatatatggctaatcatgagac |
40870664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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