View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_266 (Length: 240)
Name: NF10233A_low_266
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_266 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 8869 - 8634
Alignment:
| Q |
5 |
tggacatcaccattgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8869 |
tggacatcaccattgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactt |
8770 |
T |
|
| Q |
105 |
tgcgtctcattcaagaaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaacttccttgaggc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8769 |
tgcgtctcattcaagaaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaatttccttgaggc |
8670 |
T |
|
| Q |
205 |
cccggaactgccgagagaaaatttcaaggaaaaatg |
240 |
Q |
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|||||||||| |||||||||||||||| ||||||| |
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| T |
8669 |
accggaactgcagagagaaaatttcaagaaaaaatg |
8634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 11631907 - 11631697
Alignment:
| Q |
18 |
tgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattca |
117 |
Q |
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||||||| ||| |||||||||||||||||||||| || || | ||||||| ||||||||||||||||||||| ||||||||||| |||| || |||| |
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| T |
11631907 |
tgttggtgtctactgcttcttttctagcatgttacttcttggatattcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttca |
11631808 |
T |
|
| Q |
118 |
agaaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaacttccttgaggccccggaactgccg |
217 |
Q |
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| T |
11631807 |
agagccaattacaagtattccagatgtcattgcggtgatcattcaggcaaaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcag |
11631708 |
T |
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| Q |
218 |
agagaaaattt |
228 |
Q |
| |
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|| |||||||| |
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| T |
11631707 |
agtgaaaattt |
11631697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 11618370 - 11618535
Alignment:
| Q |
63 |
ttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattcaagaaccaatttcaagcatcccagatgttattgcagtgatcattga |
162 |
Q |
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||||| || ||||||||||||||||||| | || ||||||||||| || ||||||| |||||| ||| ||||||||| |||||||||| ||||||| | |
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| T |
11618370 |
ttcctctgaatgcaagtaatgttttcacattggtcgcaactttgcgccttgttcaagatccaattgcaaacatcccagaagttattgcagcgatcattca |
11618469 |
T |
|
| Q |
163 |
ggcaaaagttgcgttctctcggattgttaacttccttgaggccccggaactgccgagagaaaattt |
228 |
Q |
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||| |||||||| || ||||||||||||| ||||||||||| || ||||||| ||| |||||||| |
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| T |
11618470 |
ggcgaaagttgcatttgctcggattgttaatttccttgaggcaccagaactgcagagtgaaaattt |
11618535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 11663141 - 11663351
Alignment:
| Q |
18 |
tgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattca |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||| |||||||||||| | || |||||||| || || |||| |
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| T |
11663141 |
tgttggtatctgctgcttcttttatagcatgttacttcctgaaagttcctttgcgtgcaagcaatgttttcactttcgtagcaactttacgccttgttca |
11663240 |
T |
|
| Q |
118 |
agaaccaatttcaagc-atcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaacttccttgaggccccggaactgcc |
216 |
Q |
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||| |||| ||| ||| |||||||||||| |||| ||||| ||| | || ||||| || || ||||||||| || || |||||||| || ||||||| |
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| T |
11663241 |
agagccaa-ttctagcaatcccagatgttgttgctgtgattattcaagccaaagtcgcattttctcggattcaaaattttcttgaggctccagaactgca |
11663339 |
T |
|
| Q |
217 |
gagagaaaattt |
228 |
Q |
| |
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||| |||||||| |
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| T |
11663340 |
gagtgaaaattt |
11663351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 11710452 - 11710257
Alignment:
| Q |
18 |
tgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattca |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||| |||||||||| || | || |||| |
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| T |
11710452 |
tgttggtgtctgctgcttcttttctagcatgttacttccttaaaattcctttgcatgcaagtaatgttttcacttttgtggcaacattaggccttgttca |
11710353 |
T |
|
| Q |
118 |
agaaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaacttccttgaggccccggaact |
213 |
Q |
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|| |||||| || | || || ||||||||| | ||||||||| | ||||||||||| || ||||||| ||| ||||||||||| || ||||| |
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| T |
11710352 |
agtgccaattacaggtataccggatgttattacggtgatcattcaagcaaaagttgcatttgctcggatatgtaatttccttgaggcaccagaact |
11710257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 11673928 - 11673754
Alignment:
| Q |
18 |
tgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattca |
117 |
Q |
| |
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||||||| ||| | ||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| |||||||||| || || || |||| |
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| T |
11673928 |
tgttggtgtcttcggcttcttttctggtctgttacttcttgaaagttcctttgcatgcaagtaatgttttcacttttgtggcaacattacgccttgttca |
11673829 |
T |
|
| Q |
118 |
agaaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaa |
192 |
Q |
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||| || ||| || | || |||||||||||||| ||||| ||| | ||||||||||| || || |||||||||| |
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| T |
11673828 |
agatcctattacaggtattccagatgttattgcggtgattattcaagcaaaagttgcatttgctaggattgttaa |
11673754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 11739716 - 11739571
Alignment:
| Q |
44 |
gcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattcaagaaccaatttcaagcatcccagatg |
143 |
Q |
| |
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|||||||| || |||| |||||||| ||||| | |||| | ||||| |||||||||| | || || || ||||| |||||||||| |||||| |||| |
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| T |
11739716 |
gcatgttacttcttgaatgttcctttacatgcgaataatatattcacctttgtggcaacaatacgacttatgcaagatccaatttcaaccatccctgatg |
11739617 |
T |
|
| Q |
144 |
ttattgcagtgatcattgaggcaaaagttgcgttctctcggattgt |
189 |
Q |
| |
|
|||||| |||||||||| | ||||| |||| || ||||||||||| |
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| T |
11739616 |
ttattggagtgatcattcaagcaaatattgcattttctcggattgt |
11739571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 44811728 - 44811912
Alignment:
| Q |
20 |
ttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattcaag |
119 |
Q |
| |
|
||||| ||||||||||| ||| |||||| |||||||| || |||||||||||||||| ||||||||||||| |||| |||||||| || || |||||| |
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| T |
44811728 |
ttggtctctgctgcttcgtttggagcatgctattttcttaacgttcctttgcatgcaaataatgttttcacttttgtagcaactttacgccttgttcaag |
44811827 |
T |
|
| Q |
120 |
aaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgttctctcggattgttaacttccttgaggc |
204 |
Q |
| |
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| || ||| | ||||||||| ||||||| ||| | ||| ||||||||||||||||| |||||||| | || ||||||||||| |
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| T |
44811828 |
atccgattagatccatcccagacgttattggggtggttattcaggcaaaagttgcgttcgctcggattctaaaattccttgaggc |
44811912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 12680 - 12833
Alignment:
| Q |
21 |
tggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattcaaga |
120 |
Q |
| |
|
||||||||| ||| |||||| | |||||||| || || ||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
12680 |
tggtatctgttgcctcttttttggcatgttacttcttggaagttccattgcatgcaagtaatgttttcacatttgtggcaactttgaaccttgttcaaga |
12779 |
T |
|
| Q |
121 |
accaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgc |
174 |
Q |
| |
|
|||||||||||||| || ||||||||| ||| ||| ||| | || |||||||| |
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| T |
12780 |
tccaatttcaagcattccggatgttattacagcgattattcaagctaaagttgc |
12833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 38151541 - 38151448
Alignment:
| Q |
39 |
ttctagcatgttattttctgaaagttcctttgcatgcaagtaatgttttcactattgtggcaactttgcgtctcattcaagaaccaatttcaag |
132 |
Q |
| |
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||||||||||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||| |||||| |||| |
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| T |
38151541 |
ttctagcatgttacttcttggatgttcctttgcatgcaagtaatgttttcacttttgttgcaactttgcgccttgttcaagagccaattacaag |
38151448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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