View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_270 (Length: 239)
Name: NF10233A_low_270
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_270 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 5750390 - 5750168
Alignment:
| Q |
17 |
ctacgttaattgaccaatttaatttagagtcttcaagttcaaattagttgatttttgtgacctcttggttaatttactcatgtaataatcttggttttat |
116 |
Q |
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| T |
5750390 |
ctacgttaattgacaaatttaatttagagtcttcaagttcaaattagttgatttttgtgacctcttggttaatttactcatgtaataatcttggttttat |
5750291 |
T |
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| Q |
117 |
tatcttcgtttgttttggttagctatgttaaatactttattcttcaattttaggtgttgtgtgtatatgcatgtgcaaatggtagtatggtatatattaa |
216 |
Q |
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| T |
5750290 |
tatcttcgtttgttttggttagctatgttaaatactttattcttcaattttaggtgttgtgtgtatatgcatgtgcaaatggtagtatggtatatattaa |
5750191 |
T |
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| Q |
217 |
ttgagtccaccttgatttatatt |
239 |
Q |
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| T |
5750190 |
ttgagtccaccttgatttatatt |
5750168 |
T |
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