View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_272 (Length: 239)

Name: NF10233A_low_272
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_272
NF10233A_low_272
[»] chr6 (10 HSPs)
chr6 (20-221)||(26975524-26975725)
chr6 (44-221)||(26636219-26636396)
chr6 (44-221)||(26742185-26742362)
chr6 (20-221)||(26950316-26950517)
chr6 (20-221)||(26959699-26959900)
chr6 (20-204)||(27664613-27664797)
chr6 (32-221)||(26849285-26849474)
chr6 (23-221)||(25074443-25074638)
chr6 (113-221)||(31288878-31288986)
chr6 (20-76)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (23-221)||(17992626-17992824)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 26975725 - 26975524
Alignment:
Q  20 agtgttgtcctacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  26975725 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag 26975626  T
Q  120 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 219  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26975625 atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattc 26975526  T
Q  220 at 221  Q
    ||    
T  26975525 at 26975524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 26636396 - 26636219
Alignment:
Q  44 gttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcag 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26636396 gttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatttgagtccaacaaggtaatcag 26636297  T
Q  144 caacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26636296 caacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcat 26636219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 26742362 - 26742185
Alignment:
Q  44 gttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcag 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26742362 gttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatttgagtccaacaaggtaatcag 26742263  T
Q  144 caacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26742262 caacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcat 26742185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 26950517 - 26950316
Alignment:
Q  20 agtgttgtcctacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 119  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| |||||||||||||||||||    
T  26950517 agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag 26950418  T
Q  120 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 219  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950417 atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 26950318  T
Q  220 at 221  Q
    ||    
T  26950317 at 26950316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 26959900 - 26959699
Alignment:
Q  20 agtgttgtcctacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 119  Q
    ||||||||| | |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| ||||||| |||||||||||    
T  26959900 agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag 26959801  T
Q  120 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 219  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||    
T  26959800 atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcatactc 26959701  T
Q  220 at 221  Q
    ||    
T  26959700 at 26959699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
Q  20 agtgttgtcctacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 119  Q
    ||||||||| ||||||  || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  27664613 agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag 27664712  T
Q  120 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa 204  Q
    ||| ||||||||| ||||| ||||||||||||| | ||    |||||||||||| |||||||||||||||||||| |||||||||    
T  27664713 attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa 27664797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 26849474 - 26849285
Alignment:
Q  32 cccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatttgagtccaa 131  Q
    |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  26849474 cccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgagatttaagtccaa 26849375  T
Q  132 ctaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 221  Q
    | ||||||||||||||||| | |||||| ||||||||||||| |||||| ||  ||||||||||  ||||||||| | ||||||||||||    
T  26849374 caaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatattcat 26849285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 25074638 - 25074443
Alignment:
Q  23 gttgtcctacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 122  Q
    |||||| | |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||||||||||| ||||||||||| |||||||||     
T  25074638 gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc 25074542  T
Q  123 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 221  Q
      || ||||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||    
T  25074541 gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcatattcat 25074443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 31288986 - 31288878
Alignment:
Q  113 attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt 212  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  213 catattcat 221  Q
    |||||||||    
T  31288886 catattcat 31288878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
Q  20 agtgttgtcctacccattcccccagttccaaggattcctattatgaagactccatca 76  Q
    ||||||||  ||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289042 agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 17992626 - 17992824
Alignment:
Q  23 gttgtcctacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 122  Q
    |||||| | |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||||||||||| ||||||||||||||||||||||    
T  17992626 gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt 17992725  T
Q  123 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcat 221  Q
    |||| ||||  |||||||| ||||||||||  ||||||||||| ||||||| |||   ||||||||||||||||||||||||||| |||||||||||||    
T  17992726 tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcat 17992824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University