View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_273 (Length: 239)
Name: NF10233A_low_273
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_273 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 1239798 - 1240020
Alignment:
| Q |
3 |
tgaagaatgttttctctgacttagaagccaaaactagcaatagagaacccaattgactaacactcattgtaaccacacaacaaataataaagaatctata |
102 |
Q |
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| T |
1239798 |
tgaagaatgttttctctgacttagaagccaaaactagcaatagagaacccaattgactaacactcattgtaaccacacaacaaattataaagaatctata |
1239897 |
T |
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| Q |
103 |
cctatgacttataatccataattgtcttctaatcctcacatgttccttaaatataacacctgcttcagaaccacacccttcaaaaagcttatgaacacct |
202 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||||| |
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| T |
1239898 |
cctatgacttataatccataattgtcttctaattctcacatgttctttaaatataacacccgcttctgaaccacacccttcaaaaagtttgtgaacacct |
1239997 |
T |
|
| Q |
203 |
tcaaatcttaatatttgaagctg |
225 |
Q |
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||||||||||||||||| ||||| |
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| T |
1239998 |
tcaaatcttaatatttggagctg |
1240020 |
T |
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