View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_277 (Length: 238)
Name: NF10233A_low_277
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_277 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 42795905 - 42795708
Alignment:
| Q |
18 |
catcaggtaccttccaagctgtctgaaccctgtatatttcttcaaaacacgcgttgaaattcttaaacctttccttcaaagccatccttgatgcattatt |
117 |
Q |
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| T |
42795905 |
catcaggtaccttccaagctgtctgaaccctgtatatttcttcaaaacacgcgttgaaattcttaaacctttccttcaaagccatccttgatgcattatt |
42795806 |
T |
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| Q |
118 |
agagctccctccaaccccctcatccctcaaacaagccaaggccttgctccaacaggctctaaggtaccccgtagcatactgtcgtaccagcccgcggc |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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| T |
42795805 |
agagctccctccaaccccttcatccctcaaacaagccaaggccttgctccaacaggctctaaggtaccccgtagcatactgccgtacctgaccgcggc |
42795708 |
T |
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