View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_279 (Length: 238)
Name: NF10233A_low_279
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_279 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 36176547 - 36176326
Alignment:
| Q |
17 |
acatcacagatagagggggcaggtataatacggacacaagaatattgccattaccataactatccaaatttctccctatgtagattctcattcattgctg |
116 |
Q |
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| T |
36176547 |
acatcacagatagagggggcaggtataatacggacacaagaatattgccattaccataactatccaaatttctccctatgtagattctcattcattgctg |
36176448 |
T |
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| Q |
117 |
aaacaggttccatctaaggtggggatgtagagaagtactttatgataaatctgctgatgggagcacttatgttacaggactttccttgtcaaaggtgata |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36176447 |
aaacaggttccatctaaggtggggatgcagagaagtactttatgataaatctgctgatgggagcacttatgttacaggactttccttgtcaaaggtgata |
36176348 |
T |
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| Q |
217 |
tactttatctgcactatttaag |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
36176347 |
tactttatctgcactatttaag |
36176326 |
T |
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