View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_28 (Length: 413)
Name: NF10233A_low_28
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 37507771 - 37508175
Alignment:
| Q |
1 |
gtgttcataaatcattatgtgagtcccgcaaaaattttagagcacacaagttttttagagtgcattgtttgtatttttcttaaaagtgtttcatccaaac |
100 |
Q |
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| T |
37507771 |
gtgttgataaatcattatgtgagtcccacaaaaattttagagcgcacaagttttttagagtgcattgtttgtatttttcttaaaagtgtttcatccaaac |
37507870 |
T |
|
| Q |
101 |
atgccacagattagttggtctattgcactcttgttactcactaaataaaatttaaacatccacaataaaaaagagacaaagtaaaatattattttatcaa |
200 |
Q |
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| T |
37507871 |
atgccacagattagttggtctattgcactcttgttactcactaaataaaatttaaacatccacaataaaaaagagacaaagtaaaatattattttattaa |
37507970 |
T |
|
| Q |
201 |
gagaagtattaatcttttgagggaagagacggggaaaactagtttcccacgtacgatttcactgatatgttttgatcacaagagcaacgtccgacgagga |
300 |
Q |
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| T |
37507971 |
gagaagtattaatcttttgagggaagagacggggaaaactagtttcccacgtacgatttcactgatatgttttgatcacaagaacaacgtccgacgagga |
37508070 |
T |
|
| Q |
301 |
acaacaatgttgatggcaagttgggaatacctgcaagcactttacactcaagccagtaagtgagcaaagactcggaggtttttaggatagagaatgtgaa |
400 |
Q |
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| T |
37508071 |
acaacaatgttgatggcaagttgggaatacctgcaagcactttactctcaagccagtaagtgagcaaagactgggaggtttttaggatagagaatgtgaa |
37508170 |
T |
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| Q |
401 |
cacca |
405 |
Q |
| |
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| T |
37508171 |
cacca |
37508175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 37848377 - 37848265
Alignment:
| Q |
90 |
ttcatccaaacatgccacagattagttggtctattgcactcttgttactcactaaataaaatttaaacatccacaataaaaaa-gagacaaagtaaaata |
188 |
Q |
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||||||||| || ||||| ||||||||| || | ||| |||||||| |||||| ||||||||||| | ||| || ||||||| |||||||||||||||| |
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| T |
37848377 |
ttcatccaattataccacaaattagttggcctttggcattcttgttattcactacataaaatttaaccttccccagtaaaaaaagagacaaagtaaaata |
37848278 |
T |
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| Q |
189 |
ttattttatcaag |
201 |
Q |
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||||||||||||| |
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| T |
37848277 |
ttattttatcaag |
37848265 |
T |
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