View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_280 (Length: 238)
Name: NF10233A_low_280
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_280 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 42960003 - 42959789
Alignment:
| Q |
16 |
ttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatgggcaggtatgtata |
115 |
Q |
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| T |
42960003 |
ttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatgggcaggtatgtata |
42959904 |
T |
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| Q |
116 |
gggcttactgataact------------cagcttaacgaaataagctgaaaacaatttataaacatgttatagtatattttgataagccctttcaaacac |
203 |
Q |
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| T |
42959903 |
gggcttactgataactccgtttcatgaacagtttaacgaaataagctgaaaacagtttataaacatgttataatatattttgataagccctttcaaacac |
42959804 |
T |
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| Q |
204 |
atatatgtaagtgtt |
218 |
Q |
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| T |
42959803 |
atatatgtaagtgtt |
42959789 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 5504741 - 5504827
Alignment:
| Q |
25 |
acagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatgggcaggtatg |
111 |
Q |
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| T |
5504741 |
acagactccgagtcgtcgatggttcaacgtttactgaatcaccaggaacaaatcctcaagccactgtgatgatgatgggaaggtatg |
5504827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 11707094 - 11707142
Alignment:
| Q |
142 |
aaataagctgaaaacaatttataaacatgttatagtatattttgataag |
190 |
Q |
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| T |
11707094 |
aaataagctgaaaacaacttataaacatgtcataatctattttgataag |
11707142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 35608112 - 35608160
Alignment:
| Q |
70 |
gaacaaatcctcaagctactgtcatgatgatgggcaggtatgtataggg |
118 |
Q |
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| T |
35608112 |
gaaccaattctcaagctactgtcatgatgatgggcaggcatgtacaggg |
35608160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 35064893 - 35064923
Alignment:
| Q |
141 |
gaaataagctgaaaacaatttataaacatgt |
171 |
Q |
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| T |
35064893 |
gaaataagctgaaaacaatttataaacatgt |
35064923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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