View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_281 (Length: 237)
Name: NF10233A_low_281
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_281 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 44735616 - 44735842
Alignment:
| Q |
11 |
gatggacatcagggcccaatattttccagtcaaatccgggatcttccaatttaacacggcccttcaaatcaacagccaacttctctgccactcttgaact |
110 |
Q |
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| T |
44735616 |
gatggacatcagggcccaatattttccagtcaaatccggcatcttccaatttaacacggcccttcaaatcaacagccaacttctctgccactcttgaact |
44735715 |
T |
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| Q |
111 |
accagtgaaaagggtcattcttggatttgcctgtaaatataatattacttcatgatccaacatcattatcatattataaaagggacatgtagccacgttc |
210 |
Q |
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| T |
44735716 |
accagtgaaaagggtcattcttggatttgcctgtaaatataatattacttcatgatccaacatcattatcatattataaaagggacatgtagccacgttc |
44735815 |
T |
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| Q |
211 |
agataaaggtatatgataattacaaaa |
237 |
Q |
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| T |
44735816 |
agataaaggtatatgataattacaaaa |
44735842 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 17780444 - 17780585
Alignment:
| Q |
69 |
gcccttcaaatcaacagccaacttctctgccactcttgaactaccagtgaaaagggtcattcttggatttgcctgtaaatataatattacttcatg---- |
164 |
Q |
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| T |
17780444 |
gcccttcagatcatcagcaaacttctctgccactcttgaactatgagtgaaatggtccactcttgaattttcctgtaaatatagaactaattcatgatcc |
17780543 |
T |
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| Q |
165 |
-atccaacatcattatcatattataaaagggacatgtagcca |
205 |
Q |
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| T |
17780544 |
aatccaacatcattaccatattataatatgaacatgtagcca |
17780585 |
T |
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