View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_294 (Length: 233)
Name: NF10233A_low_294
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_294 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 34180178 - 34180402
Alignment:
| Q |
8 |
aatggatgagcctaggaaagtaattcaaagcataagaccttgaaccacatcgaatcattcaaatcagacaaatttgttatcatgctataattattacaag |
107 |
Q |
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| T |
34180178 |
aatggatgagcctaggaaagtaattcgaagcataagaccttga-ccacatcgaatcattcaaattagacaaatttgttatcatgctataatttttacaag |
34180276 |
T |
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| Q |
108 |
aataaccaagtgatttcttaagatatagtcactacagacgttttagtgaggagaaatgagacaaaagatgatttgttaggatatatttccagcagacttt |
207 |
Q |
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| T |
34180277 |
aataaccaagtgatttcttaggatatagtcactacagacgttttagtaaggagaaatgagacaaaagatgatttcttaggatatatttccagcagacttt |
34180376 |
T |
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| Q |
208 |
tagttacgatgcatgttatatgatgt |
233 |
Q |
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| T |
34180377 |
tagttacgatgcatgttatatgatgt |
34180402 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 2570318 - 2570429
Alignment:
| Q |
60 |
aatcattcaaatcagacaaatttgttatcatgctataattattacaagaataaccaagtgatttcttaagatatagtcactacagacgttttagtgagga |
159 |
Q |
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| T |
2570318 |
aatcatccaaactagacaactttgtggtcatgctatactttttacaaggatgtcaacatgatttcttgaggtatagtcactacgaacgttttagtgaggc |
2570417 |
T |
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| Q |
160 |
gaaatgagacaa |
171 |
Q |
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| T |
2570418 |
gaaatgggacaa |
2570429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 14614630 - 14614704
Alignment:
| Q |
105 |
aagaataaccaagtgatttcttaagatatagtcactacagacgttttagtgaggagaaatgagacaaaagatgat |
179 |
Q |
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| T |
14614630 |
aagaataattaagtgatttcttgaggcatagtcactacggacgtttcaatgaggaaaaataggacaaaagatgat |
14614704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 6135752 - 6135814
Alignment:
| Q |
116 |
agtgatttcttaagatatagtcactacagacgttttagtgaggagaaatgagacaaaagatga |
178 |
Q |
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| T |
6135752 |
agtgatttcttagggtatagtcacaacaaacgtttcaatgacgagaaatgagacaagagatga |
6135814 |
T |
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