View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_295 (Length: 232)

Name: NF10233A_low_295
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_295
NF10233A_low_295
[»] scaffold0547 (1 HSPs)
scaffold0547 (57-207)||(6996-7147)
[»] chr3 (10 HSPs)
chr3 (60-179)||(25000490-25000609)
chr3 (59-160)||(8280982-8281082)
chr3 (59-160)||(8309792-8309892)
chr3 (19-81)||(31027496-31027558)
chr3 (19-81)||(31037917-31037979)
chr3 (19-60)||(1775162-1775203)
chr3 (25-59)||(22862251-22862285)
chr3 (25-59)||(22877410-22877444)
chr3 (25-59)||(22892469-22892503)
chr3 (142-170)||(19441642-19441670)
[»] chr8 (7 HSPs)
chr8 (60-164)||(19908513-19908617)
chr8 (70-160)||(2128626-2128715)
chr8 (86-160)||(2143796-2143870)
chr8 (142-170)||(14551180-14551208)
chr8 (142-170)||(16256280-16256308)
chr8 (25-53)||(18687572-18687600)
chr8 (142-170)||(18788421-18788449)
[»] chr5 (12 HSPs)
chr5 (86-207)||(23724483-23724606)
chr5 (60-160)||(37649026-37649126)
chr5 (19-92)||(33286350-33286421)
chr5 (19-92)||(33301400-33301471)
chr5 (19-60)||(18119881-18119922)
chr5 (19-60)||(18130261-18130302)
chr5 (19-56)||(31584266-31584303)
chr5 (25-53)||(9542086-9542114)
chr5 (25-53)||(9554958-9554986)
chr5 (25-53)||(13176618-13176646)
chr5 (25-53)||(13188963-13188991)
chr5 (27-63)||(37210025-37210061)
[»] chr7 (12 HSPs)
chr7 (58-160)||(2967661-2967762)
chr7 (86-160)||(2148188-2148262)
chr7 (86-160)||(2163399-2163473)
chr7 (69-164)||(4184547-4184641)
chr7 (19-85)||(39352266-39352332)
chr7 (19-60)||(18537458-18537499)
chr7 (19-60)||(18547966-18548007)
chr7 (72-128)||(16714569-16714625)
chr7 (72-128)||(17688805-17688861)
chr7 (25-54)||(39993841-39993870)
chr7 (60-92)||(18590349-18590381)
chr7 (60-92)||(18621304-18621336)
[»] chr2 (8 HSPs)
chr2 (74-183)||(39755682-39755792)
chr2 (19-81)||(31865453-31865515)
chr2 (19-81)||(31895644-31895706)
chr2 (86-160)||(28875809-28875883)
chr2 (86-160)||(28891019-28891093)
chr2 (69-164)||(27425874-27425969)
chr2 (69-164)||(27440918-27441013)
chr2 (119-160)||(17630693-17630734)
[»] chr1 (8 HSPs)
chr1 (60-160)||(18287314-18287413)
chr1 (70-164)||(16199576-16199669)
chr1 (74-140)||(21503883-21503949)
chr1 (70-164)||(16214591-16214684)
chr1 (70-160)||(18291694-18291784)
chr1 (69-164)||(18596481-18596575)
chr1 (72-160)||(36764894-36764982)
chr1 (142-170)||(4149139-4149167)
[»] scaffold0089 (2 HSPs)
scaffold0089 (70-160)||(13343-13432)
scaffold0089 (142-170)||(23587-23615)
[»] scaffold0001 (1 HSPs)
scaffold0001 (70-160)||(74674-74763)
[»] chr4 (9 HSPs)
chr4 (70-160)||(14660625-14660714)
chr4 (70-160)||(14673696-14673785)
chr4 (70-160)||(14655251-14655340)
chr4 (70-160)||(9249640-9249729)
chr4 (87-164)||(19641455-19641532)
chr4 (19-56)||(21533989-21534026)
chr4 (19-56)||(24108687-24108724)
chr4 (19-56)||(24121336-24121373)
chr4 (25-53)||(5405901-5405929)
[»] chr6 (7 HSPs)
chr6 (70-164)||(24374809-24374902)
chr6 (19-63)||(3691322-3691366)
chr6 (19-59)||(20215225-20215265)
chr6 (19-59)||(22109248-22109288)
chr6 (19-81)||(27294669-27294731)
chr6 (27-63)||(24049245-24049281)
chr6 (25-53)||(26799603-26799631)
[»] scaffold0029 (1 HSPs)
scaffold0029 (74-150)||(6794-6870)
[»] scaffold0124 (1 HSPs)
scaffold0124 (66-160)||(27722-27815)
[»] scaffold0418 (1 HSPs)
scaffold0418 (19-60)||(3719-3760)
[»] scaffold0372 (1 HSPs)
scaffold0372 (19-60)||(14896-14937)
[»] scaffold1901 (1 HSPs)
scaffold1901 (25-60)||(885-920)
[»] scaffold0131 (1 HSPs)
scaffold0131 (19-58)||(23100-23139)
[»] scaffold0471 (1 HSPs)
scaffold0471 (19-56)||(5948-5985)
[»] scaffold0170 (1 HSPs)
scaffold0170 (55-92)||(17-54)


Alignment Details
Target: scaffold0547 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 7147 - 6996
Alignment:
Q  57 cagagatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaaga 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7147 cagagatccattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaactcaacaatttccagaaatcaccaaga 7048  T
Q  157 acactcaaaccctaaacgttttcaaa-tcaacccaaatcaacgcaaatcaac 207  Q
    ||||||||||||||| ||||| |||| || |||  ||||||| |||||||||    
T  7047 acactcaaaccctaaccgtttccaaattccaccagaatcaacacaaatcaac 6996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 25000609 - 25000490
Alignment:
Q  60 agatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaaca 159  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25000609 agatccattaaccacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaactcaacaatttccagaaatcaccaagaaca 25000510  T
Q  160 ctcaaaccctaaacgttttc 179  Q
    |||||||||||| |||||||    
T  25000509 ctcaaaccctaaccgttttc 25000490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 8281082 - 8280982
Alignment:
Q  59 gagatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaac 158  Q
    |||||| |||||||||| ||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||    
T  8281082 gagatccattaatcacatgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccagaaatcacgaagaac 8280984  T
Q  159 ac 160  Q
    ||    
T  8280983 ac 8280982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 8309892 - 8309792
Alignment:
Q  59 gagatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaac 158  Q
    |||||| |||||||||| ||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||    
T  8309892 gagatccattaatcacatgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccagaaatcacgaagaac 8309794  T
Q  159 ac 160  Q
    ||    
T  8309793 ac 8309792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 31027558 - 31027496
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccac 81  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  31027558 acatcagctataaatactgttcacagtgccacataatcaagagatccattaatcacacgccac 31027496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 31037979 - 31037917
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccac 81  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  31037979 acatcagctataaatactgttcacagtgccacataatcaagagatccattaatcacacgccac 31037917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1775162 - 1775203
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  1775162 acatcagctataaatactgttcacagtgccacataatccaga 1775203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 22862285 - 22862251
Alignment:
Q  25 gctataaatactgttcacagtgccacataatccag 59  Q
    |||||||||||||||||||||||||||||| ||||    
T  22862285 gctataaatactgttcacagtgccacataacccag 22862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 22877444 - 22877410
Alignment:
Q  25 gctataaatactgttcacagtgccacataatccag 59  Q
    |||||||||||||||||||||||||||||| ||||    
T  22877444 gctataaatactgttcacagtgccacataacccag 22877410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 22892503 - 22892469
Alignment:
Q  25 gctataaatactgttcacagtgccacataatccag 59  Q
    |||||||||||||||||||||||||||||| ||||    
T  22892503 gctataaatactgttcacagtgccacataacccag 22892469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 19441642 - 19441670
Alignment:
Q  142 cagaaatcaccaagaacactcaaacccta 170  Q
    |||||||||||||||||||||||||||||    
T  19441642 cagaaatcaccaagaacactcaaacccta 19441670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 19908617 - 19908513
Alignment:
Q  60 agatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaaca 159  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| | |||||    
T  19908617 agatccattaaccacacgccacctcaacaaacacttttcaactttctctttctgatctcaaagatcaaaactcaacaatttccaggaatcacgatgaaca 19908518  T
Q  160 ctcaa 164  Q
    |||||    
T  19908517 ctcaa 19908513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 2128715 - 2128626
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| | |||||||||||||| ||| ||||||||||| |||||||||||||| |||||| ||||||||    
T  2128715 atcacacgccacatca-caaacactttcccactttctctttctgctctcaaagatcaaaactcaacaatttccaggaatcacgaagaacac 2128626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 2143870 - 2143796
Alignment:
Q  86 acaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||||| | |||||||||||||| ||| ||||||||||| |||||||||||||  |||||| ||||||||    
T  2143870 acaaacactttcccactttctctttctgctctcaaagatcaaaactcaacaatttccaagaatcacgaagaacac 2143796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 14551180 - 14551208
Alignment:
Q  142 cagaaatcaccaagaacactcaaacccta 170  Q
    |||||||||||||||||||||||||||||    
T  14551180 cagaaatcaccaagaacactcaaacccta 14551208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 16256308 - 16256280
Alignment:
Q  142 cagaaatcaccaagaacactcaaacccta 170  Q
    |||||||||||||||||||||||||||||    
T  16256308 cagaaatcaccaagaacactcaaacccta 16256280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 18687600 - 18687572
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  18687600 gctataaatactgttcacagtgccacata 18687572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 18788449 - 18788421
Alignment:
Q  142 cagaaatcaccaagaacactcaaacccta 170  Q
    |||||||||||||||||||||||||||||    
T  18788449 cagaaatcaccaagaacactcaaacccta 18788421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 23724606 - 23724483
Alignment:
Q  86 acaaacacttttcaactttctctttctgatctaaaagatcaaaat-tcaacaatttccagaaatcaccaagaacactcaaaccctaaacgttttcaaa-t 183  Q
    ||||||||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |    
T  23724606 acaaacactttccaactttctctttctgctctaaaagatcaaaaactcaacaatttccagaaaccaccaagaacactcaaaccctaaccgtttccaaatt 23724507  T
Q  184 caacccaaatcaacgcaaatcaac 207  Q
    | |||  ||||||| |||||||||    
T  23724506 ccaccagaatcaacacaaatcaac 23724483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 37649026 - 37649126
Alignment:
Q  60 agatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaaca 159  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| | | ||||||||||  ||||||||||||||||||||  |||||||    
T  37649026 agatccattaatcacacgccacctcaacaaacactttccaattttctctttctgctgtcaaagatcaaagctcaacaatttccagaaatcatgaagaaca 37649125  T
Q  160 c 160  Q
    |    
T  37649126 c 37649126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 33286350 - 33286421
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccacctcaacaaaca 92  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||| | ||| ||||||||||    
T  33286350 acatcagctataaatactgttcacagtgccacataatcc--agatccattaatcacaagacacatcaacaaaca 33286421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 33301400 - 33301471
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccacctcaacaaaca 92  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||| | ||| ||||||||||    
T  33301400 acatcagctataaatactgttcacagtgccacataatcc--agatccattaatcacaagacacatcaacaaaca 33301471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 18119922 - 18119881
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18119922 acatcagctataaatactgttcacagtgccacataatccaga 18119881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 18130302 - 18130261
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18130302 acatcagctataaatactgttcacagtgccacataatccaga 18130261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 31584266 - 31584303
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatc 56  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  31584266 acatcagctataaatactgttcacagtgccacataatc 31584303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 9542114 - 9542086
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  9542114 gctataaatactgttcacagtgccacata 9542086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 9554986 - 9554958
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  9554986 gctataaatactgttcacagtgccacata 9554958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 13176646 - 13176618
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  13176646 gctataaatactgttcacagtgccacata 13176618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 13188991 - 13188963
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  13188991 gctataaatactgttcacagtgccacata 13188963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 37210025 - 37210061
Alignment:
Q  27 tataaatactgttcacagtgccacataatccagagat 63  Q
    ||||||||| || ||||||||||||||||||||||||    
T  37210025 tataaatacagtgcacagtgccacataatccagagat 37210061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 2967661 - 2967762
Alignment:
Q  58 agagatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaa 157  Q
    ||||||| |||||||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||| |||||    
T  2967661 agagatccattaatcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaattcccagaaatcacgaagaa 2967759  T
Q  158 cac 160  Q
    |||    
T  2967760 cac 2967762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 2148188 - 2148262
Alignment:
Q  86 acaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||||| |||||||||||||||| ||  ||||||||||| ||||||||||||||||||||| ||||||||    
T  2148188 acaaacactttccaactttctctttctgctcccaaagatcaaaactcaacaatttccagaaatcacgaagaacac 2148262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 2163399 - 2163473
Alignment:
Q  86 acaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||||| |||||||||||||||| ||  ||||||||||| ||||||||||||||||||||| ||||||||    
T  2163399 acaaacactttccaactttctctttctgctcccaaagatcaaaactcaacaatttccagaaatcacgaagaacac 2163473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 4184547 - 4184641
Alignment:
Q  69 aatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    ||||||||||||| ||| |||||||||  ||| |||||||||||||||  ||||||||||| |||||||||||||| |||||| | ||||||||||    
T  4184547 aatcacacgccacatca-caaacacttcccaattttctctttctgatcccaaagatcaaaactcaacaatttccaggaatcacgatgaacactcaa 4184641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 39352332 - 39352266
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccacctca 85  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||    
T  39352332 acatcagctataaatactgttcacagtgccacataattcggagatccattaatcacacgccaactca 39352266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18537458 - 18537499
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18537458 acatcagctataaatactgttcacagtgccacataatccaga 18537499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18547966 - 18548007
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18547966 acatcagctataaatactgttcacagtgccacataatccaga 18548007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 16714569 - 16714625
Alignment:
Q  72 cacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaa 128  Q
    ||||||||| ||||||||||||||| |||||||||||||||  ||| ||||||||||    
T  16714569 cacacgccaactcaacaaacactttccaactttctctttctactctcaaagatcaaa 16714625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 17688805 - 17688861
Alignment:
Q  72 cacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaa 128  Q
    ||||||||| ||||||||||||||| |||||||||||||||  ||| ||||||||||    
T  17688805 cacacgccaactcaacaaacactttccaactttctctttctactctcaaagatcaaa 17688861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 39993870 - 39993841
Alignment:
Q  25 gctataaatactgttcacagtgccacataa 54  Q
    ||||||||||||||||||||||||||||||    
T  39993870 gctataaatactgttcacagtgccacataa 39993841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 18590381 - 18590349
Alignment:
Q  60 agatctattaatcacacgccacctcaacaaaca 92  Q
    ||||| |||||||||||||||||||||||||||    
T  18590381 agatccattaatcacacgccacctcaacaaaca 18590349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 18621304 - 18621336
Alignment:
Q  60 agatctattaatcacacgccacctcaacaaaca 92  Q
    ||||| |||||||||||||||||||||||||||    
T  18621304 agatccattaatcacacgccacctcaacaaaca 18621336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 39755682 - 39755792
Alignment:
Q  74 cacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaat-tcaacaatttccagaaatcaccaagaacactcaaaccctaaa 172  Q
    ||||||||||||||||||||||| ||||||||||| ||||  || |||||||||||  ||||||||||||||||||||| ||||||| |||||||||||     
T  39755682 cacgccacctcaacaaacactttccaactttctctctctgccctcaaagatcaaaaactcaacaatttccagaaatcacgaagaacaatcaaaccctaac 39755781  T
Q  173 cgttttcaaat 183  Q
    ||||| |||||    
T  39755782 cgtttccaaat 39755792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 31865515 - 31865453
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccac 81  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31865515 acatcagctataaatactgttcacagtgccacataatccagagatccattaatcacacgccac 31865453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 31895706 - 31895644
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccac 81  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31895706 acatcagctataaatactgttcacagtgccacataatccagagatccattaatcacacgccac 31895644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 28875809 - 28875883
Alignment:
Q  86 acaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||||||||| ||| ||||||||    
T  28875809 acaaacactttccaactttctctttctgctctcaaagatcaaaactcaacaaattccagaaaccacgaagaacac 28875883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 28891019 - 28891093
Alignment:
Q  86 acaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||||||||| ||| ||||||||    
T  28891019 acaaacactttccaactttctctttctgctctcaaagatcaaaactcaacaaattccagaaaccacgaagaacac 28891093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 27425969 - 27425874
Alignment:
Q  69 aatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatc-aaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||| |||||| ||| |||||||||  |||||||||||||||||||| ||||||| |||| |||||||||||||| |||||| | ||||||||||    
T  27425969 aatcacgcgccacatca-caaacacttcccaactttctctttctgatctcaaagatcaaaaactcaacaatttccaggaatcacgatgaacactcaa 27425874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 27441013 - 27440918
Alignment:
Q  69 aatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagat-caaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||| |||||| ||| |||||||||  |||||||||||||||||||| ||||||  |||| |||||||||||||| |||||| | ||||||||||    
T  27441013 aatcacgcgccacatca-caaacacttcccaactttctctttctgatctcaaagataaaaaactcaacaatttccaggaatcacgatgaacactcaa 27440918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 17630693 - 17630734
Alignment:
Q  119 aaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  17630693 aaagatcaaaactcaacaatttccagaaatcacgaagaacac 17630734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 18287314 - 18287413
Alignment:
Q  60 agatctattaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaaca 159  Q
    ||||| |||||||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| |||||| |||||||||||||| |||||||    
T  18287314 agatccattaatcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacagtttccagaaatcacgaagaaca 18287412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 16199669 - 16199576
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||||||||| ||| |||||||||  |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  16199669 atcacacgccacatca-caaacacttcccaactttctctttctgatctcaaagatcaaaactcaacaatttccagaaatcacgatgaacactcaa 16199576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 21503883 - 21503949
Alignment:
Q  74 cacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaattt 140  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  21503883 cacgccacctcaacaaacactttccaactttctctttctgatcaaaaagatcaaaactcaacaattt 21503949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 16214684 - 16214591
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||||||||| ||| |||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||  |||||| | ||||||||||    
T  16214684 atcacacgccacatca-caaacacttcccaactttctctttctgatctcaaagatcaaaactcaacaatttccaagaatcacgatgaacactcaa 16214591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 18291694 - 18291784
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatc-aaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||  ||||||||    
T  18291694 atcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaaactcaacaatttccagaaatcatgaagaacac 18291784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 18596481 - 18596575
Alignment:
Q  69 aatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||| |||||| ||| |||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||  |||||| | ||||||||||    
T  18596481 aatcacgcgccacatca-caaacacttcccaactttctctttctgatctcaaagatcaaaactcaacaatttccaagaatcacgatgaacactcaa 18596575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 36764982 - 36764894
Alignment:
Q  72 cacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    ||||||||| ||||||||||||||| |||||||||||||||  ||| ||||||||||  |||| || |||||||||  || ||||||||    
T  36764982 cacacgccaactcaacaaacactttccaactttctctttctactctcaaagatcaaagctcaaaaaattccagaaacaacaaagaacac 36764894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 4149167 - 4149139
Alignment:
Q  142 cagaaatcaccaagaacactcaaacccta 170  Q
    |||||||||||||||||||||||||||||    
T  4149167 cagaaatcaccaagaacactcaaacccta 4149139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 13432 - 13343
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  13432 atcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccagaaatcacgaagaacac 13343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 23587 - 23615
Alignment:
Q  142 cagaaatcaccaagaacactcaaacccta 170  Q
    |||||||||||||||||||||||||||||    
T  23587 cagaaatcaccaagaacactcaaacccta 23615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 74763 - 74674
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  74763 atcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccagaaatcacgaagaacac 74674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 14660714 - 14660625
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  14660714 atcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccagaaatcacaaagaacac 14660625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 14673696 - 14673785
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  14673696 atcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccagaaatcacgaagaacac 14673785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 14655251 - 14655340
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||    
T  14655251 atcacacgccacatca-caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttctagaaatcacgaagaacac 14655340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 9249729 - 9249640
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| | | ||||||| ||| ||||||||||||||||||||| ||||||||    
T  9249729 atcacacgccacatca-caaacactttccaactttctctttctgctttcaaagatccaaactcaacaatttccagaaatcacgaagaacac 9249640  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 19641532 - 19641455
Alignment:
Q  87 caaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||| |||||| | ||||||||||    
T  19641532 caaacactttccaactttctctttctgctctcaaagatcaaaactcaacaatttccaggaatcacaatgaacactcaa 19641455  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 21534026 - 21533989
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatc 56  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21534026 acatcagctataaatactgttcacagtgccacataatc 21533989  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 24108687 - 24108724
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatc 56  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  24108687 acatcagctataaatactgttcacagtgccacataatc 24108724  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 24121336 - 24121373
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatc 56  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  24121336 acatcagctataaatactgttcacagtgccacataatc 24121373  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 5405929 - 5405901
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  5405929 gctataaatactgttcacagtgccacata 5405901  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 24374809 - 24374902
Alignment:
Q  70 atcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacactcaa 164  Q
    |||||||||||| ||| |||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||| |||||| | ||||||||||    
T  24374809 atcacacgccacatca-caaacacttcccaactttctctttctgatctcaaagatcaaaactcaacaatttccaggaatcacgatgaacactcaa 24374902  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 3691322 - 3691366
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagat 63  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  3691322 acatcagctataaatactgttcacagtgccacataatccagagat 3691366  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 20215225 - 20215265
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccag 59  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  20215225 acatcagctataaatactgttcacattgccacataatccag 20215265  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22109248 - 22109288
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccag 59  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  22109248 acatcagctataaatactgttcacattgccacataatccag 22109288  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 27294731 - 27294669
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccagagatctattaatcacacgccac 81  Q
    ||||| |||||||||||||||||||||||||| |||||  | |||| |||| |||| ||||||    
T  27294731 acatcagctataaatactgttcacagtgccacctaatcgggggatccattagtcacgcgccac 27294669  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 24049281 - 24049245
Alignment:
Q  27 tataaatactgttcacagtgccacataatccagagat 63  Q
    ||||||||| || ||||||||||||||||||||||||    
T  24049281 tataaatacagtgcacagtgccacataatccagagat 24049245  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 26799631 - 26799603
Alignment:
Q  25 gctataaatactgttcacagtgccacata 53  Q
    |||||||||||||||||||||||||||||    
T  26799631 gctataaatactgttcacagtgccacata 26799603  T

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Target: scaffold0029 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 6870 - 6794
Alignment:
Q  74 cacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatca 150  Q
    |||||||||||||||||||||||  || |||||||||||| ||| ||||||||||  ||||||||||||||||||||    
T  6870 cacgccacctcaacaaacactttctaattttctctttctgctctcaaagatcaaagctcaacaatttccagaaatca 6794  T

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Target: scaffold0124 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 27722 - 27815
Alignment:
Q  66 attaatcacacgccacctcaacaaacacttttcaactttctctttctgatctaaaagatcaaaattcaacaatttccagaaatcaccaagaacac 160  Q
    |||||||||||||||| |||  ||||||||  |||||||||||||||  ||| ||||||||||| |||||| ||||||||||| || ||||||||    
T  27722 attaatcacacgccacatcat-aaacacttcccaactttctctttctactctcaaagatcaaaactcaacagtttccagaaataacgaagaacac 27815  T

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Target: scaffold0418 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 3760 - 3719
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  3760 acatcagctataaatactgttcacagtgccacataatccaga 3719  T

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Target: scaffold0372 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 14896 - 14937
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatccaga 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  14896 acatcagctataaatactgttcacagtgccacataatccaga 14937  T

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Target: scaffold1901 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1901
Description:

Target: scaffold1901; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 920 - 885
Alignment:
Q  25 gctataaatactgttcacagtgccacataatccaga 60  Q
    ||||||||||||||||||||||||||||||||||||    
T  920 gctataaatactgttcacagtgccacataatccaga 885  T

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Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 23100 - 23139
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatcca 58  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23100 acatcagctataaatactgttcacagtgccacataatcca 23139  T

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Target: scaffold0471 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 5948 - 5985
Alignment:
Q  19 acatcggctataaatactgttcacagtgccacataatc 56  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5948 acatcagctataaatactgttcacagtgccacataatc 5985  T

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Target: scaffold0170 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 17 - 54
Alignment:
Q  55 tccagagatctattaatcacacgccacctcaacaaaca 92  Q
    |||||||||| |||||||||||||||||||||||||||    
T  17 tccagagatccattaatcacacgccacctcaacaaaca 54  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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