View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_299 (Length: 231)
Name: NF10233A_low_299
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_299 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 32534181 - 32534407
Alignment:
| Q |
5 |
caactaatgcacgagatgaccctcacagaagtaaaagcaggcgcgtggtgagaaatgaagtctaaaggcttgagttaacattcattaaccaacagggact |
104 |
Q |
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| T |
32534181 |
caactaatgcacgagatgaccctcacagaagtaagagcaagcgcgtggtgagaaatgaagtctaaaggcttgagttaacattcattaaccaacagggact |
32534280 |
T |
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| Q |
105 |
agtaaccctcgcaaataagggcatgactaacagcctagacactccaaaatagctagcaaatattatattggatccttctaacctacacaattcaatcatg |
204 |
Q |
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| T |
32534281 |
agtaaccctcacaaataagggcatgactaacagcctagacactccaaaacagctagcaaatattatattggatccttctaacctacacaattcaatcatg |
32534380 |
T |
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| Q |
205 |
cttgaatttcagtatcaatagtactgg |
231 |
Q |
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| T |
32534381 |
cttgaatttcagtatcaatagtactgg |
32534407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 32549445 - 32549534
Alignment:
| Q |
57 |
aaatgaagtctaaaggcttgagttaacattcattaaccaacagggactagtaaccctcgcaaataagggcatgactaacagcctagacac |
146 |
Q |
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| T |
32549445 |
aaatgaaatctaaagacttgagttaacattcattagccaacaaggacaaatgagcgtcacaataaagggcactactaacagcctagacac |
32549534 |
T |
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