View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_3 (Length: 541)
Name: NF10233A_low_3
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 522
Target Start/End: Complemental strand, 3592424 - 3591910
Alignment:
| Q |
12 |
agatggacatcatgacattagtatccataaacttttggataactgttgcttagattgtttg----atcttcttgatcttgaacaatgcagattgacagtg |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3592424 |
agatggccatcatgacattagtatccataaacttttggataactgttgcttagattgtttggtcgatcttcttgatcttgaacaatgcagattgacagtg |
3592325 |
T |
|
| Q |
108 |
ttcatgaagatggtgcagtggtttttaaagatggaaatgcagttattgctgacttcattgtacattgcacagggtattcttagcattccctattagtttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592324 |
ttcatgaagatggtgcagtggtttttaaagatggaaatgcagttatcgctgacttcattgtacattgcacagggtattcttagcattccctattagtttt |
3592225 |
T |
|
| Q |
208 |
tcttttaaaccagtttatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgcatttatcgacaatgtcaaaa |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592224 |
tcttttaaaccagttcatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgcatttatcgacaatgtcaaaa |
3592125 |
T |
|
| Q |
308 |
ttgcaaagttatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacctgcaattgagacataaagt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592124 |
ttgcaaagttatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacctgcaattgagacataaagt |
3592025 |
T |
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| Q |
408 |
cttgcatattaactaaaagaaaaaagtgaaccaatgttgatgtccatttgttccttttctaggtacaagtatgattttcctttccttgaaaccaacggcg |
507 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3592024 |
cttgcatattaactacaagaaaaaagtgaaccaatgttgatgtccatttgttccttttctaggtacaagtatgattttcctttccttgaaaccaacagcg |
3591925 |
T |
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| Q |
508 |
tggtgaccgtagatg |
522 |
Q |
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||||||| ||||||| |
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| T |
3591924 |
tggtgactgtagatg |
3591910 |
T |
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