View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_302 (Length: 231)

Name: NF10233A_low_302
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_302
NF10233A_low_302
[»] scaffold0067 (1 HSPs)
scaffold0067 (54-231)||(44137-44314)
[»] chr7 (7 HSPs)
chr7 (25-231)||(17015872-17016077)
chr7 (18-50)||(23878231-23878263)
chr7 (18-50)||(23887093-23887125)
chr7 (18-66)||(8810504-8810550)
chr7 (18-66)||(8818318-8818364)
chr7 (18-50)||(30364568-30364600)
chr7 (18-50)||(30378632-30378664)
[»] chr2 (3 HSPs)
chr2 (8-200)||(22934620-22934806)
chr2 (8-200)||(22954478-22954664)
chr2 (8-200)||(22940583-22940769)
[»] scaffold0032 (1 HSPs)
scaffold0032 (115-231)||(28726-28842)
[»] chr5 (17 HSPs)
chr5 (18-104)||(7786898-7786983)
chr5 (18-104)||(7794748-7794833)
chr5 (8-50)||(7254566-7254608)
chr5 (8-50)||(7262008-7262050)
chr5 (13-50)||(23576987-23577024)
chr5 (13-50)||(5435215-5435252)
chr5 (13-50)||(5449035-5449072)
chr5 (18-66)||(11939169-11939215)
chr5 (18-66)||(11953093-11953139)
chr5 (18-50)||(17948507-17948539)
chr5 (18-50)||(17962397-17962429)
chr5 (18-50)||(31511679-31511711)
chr5 (18-50)||(31525803-31525835)
chr5 (18-50)||(36370839-36370871)
chr5 (18-50)||(36384767-36384799)
chr5 (18-50)||(36995502-36995534)
chr5 (18-50)||(37009440-37009472)
[»] chr3 (7 HSPs)
chr3 (18-104)||(6194442-6194527)
chr3 (18-104)||(6202025-6202110)
chr3 (144-206)||(15923689-15923751)
chr3 (18-66)||(20603545-20603591)
chr3 (18-66)||(37255649-37255695)
chr3 (18-66)||(37265482-37265528)
chr3 (18-50)||(11629479-11629511)
[»] chr4 (2 HSPs)
chr4 (7-50)||(16728340-16728383)
chr4 (7-49)||(16720317-16720359)
[»] chr6 (8 HSPs)
chr6 (13-50)||(18965093-18965130)
chr6 (18-66)||(9131261-9131307)
chr6 (18-66)||(9145094-9145140)
chr6 (18-50)||(615477-615509)
chr6 (18-50)||(623398-623430)
chr6 (18-50)||(8276013-8276045)
chr6 (18-50)||(16816413-16816445)
chr6 (18-50)||(16825168-16825200)
[»] scaffold0011 (1 HSPs)
scaffold0011 (13-50)||(202232-202269)
[»] chr8 (2 HSPs)
chr8 (18-66)||(12307210-12307256)
chr8 (18-50)||(15707614-15707646)
[»] scaffold0060 (1 HSPs)
scaffold0060 (18-50)||(402-434)
[»] scaffold0029 (2 HSPs)
scaffold0029 (18-50)||(20679-20711)
scaffold0029 (18-50)||(34420-34452)


Alignment Details
Target: scaffold0067 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 231
Target Start/End: Original strand, 44137 - 44314
Alignment:
Q  54 ctagggtttgttaatacgagcataaaagatgtggcttgaggagaagaaaaatgtacttctgttcctgaacttgtgattgatgcgcgtgaactggactgga 153  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44137 ctagggtttgttgataagagcataaaagatgtggcttgaggagaagaaaaatgtatttctgttcctgaacttgtgattgatgcgcgtgaactggattgga 44236  T
Q  154 actgtctctgaggcgtgtgacatgctgtatggattggatgaggatgaggatgaatgaaagaaggctgtttgtgattga 231  Q
    || | |||||| |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44237 accgcctctgaagcgtgtgacaggctgcgtggattggatgaggatgaggatgaatgaaagaaggctgtgtgtgattga 44314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 17015872 - 17016077
Alignment:
Q  25 gtctctatttatagagtgaggttgagactctagggtttgttaa-tacgagcataaaagatgtggcttgaggagaagaaaaatgtacttctgttcctgaac 123  Q
    |||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||    
T  17015872 gtctctatttatagagtgaggttgaggct--agggtttgttaaatacgagcataaaagctgtggcttgaggagaagaaaaaggtatttccgttcctgaac 17015969  T
Q  124 ttgtgattgatgcgcgtgaactggactggaactgtctctgaggcgtgtgacatgctgtatggattggatgaggatgaggatgaatgaaagaaggctgttt 223  Q
    |||||| |||||||||||||||||| |||||||| ||||||| ||||||| | ||||| | |||||| ||||||||||||||||||||||||| | ||||    
T  17015970 ttgtgactgatgcgcgtgaactggattggaactgcctctgagtcgtgtgataggctgtgtagattgggtgaggatgaggatgaatgaaagaagacggttt 17016069  T
Q  224 gtgattga 231  Q
    ||||||||    
T  17016070 gtgattga 17016077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 23878231 - 23878263
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||||||||||||||||||||||||||||||||    
T  23878231 tgtgcaggtctctatttatagagtgaggttgag 23878263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 23887093 - 23887125
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||||||||||||||||||||||||||||||||    
T  23887093 tgtgcaggtctctatttatagagtgaggttgag 23887125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8810550 - 8810504
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  8810550 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 8810504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8818364 - 8818318
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  8818364 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 8818318  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 30364568 - 30364600
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  30364568 tgtgcaggtctctatttatagagtgagtttgag 30364600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 30378632 - 30378664
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  30378632 tgtgcaggtctctatttatagagtgagtttgag 30378664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 22934806 - 22934620
Alignment:
Q  8 ttctgtgtgctgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaa-tacgagcataaaagatgtggcttgaggagaagaaaaatg 106  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  22934806 ttctttgtgttgtgcaggtctctatttatagagtgaggttgaggct--agggtttgttaaatacgagcataaaagctgtggcttgaggagaagaaaaagg 22934709  T
Q  107 tacttctgttcctgaacttgtgattgatgcgcgtgaactggactggaactgtctctgaggcgtgtgacatgctgtatggattggatgaggatga 200  Q
    || ||| |||||||||||||||| ||||||||||||| |||| ||| |||| ||||     |||||||| ||||| |  |||||||||||||||    
T  22934708 tatttccgttcctgaacttgtgactgatgcgcgtgaattggattgggactgcctct-----gtgtgacaggctgtgtaaattggatgaggatga 22934620  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 22954664 - 22954478
Alignment:
Q  8 ttctgtgtgctgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaa-tacgagcataaaagatgtggcttgaggagaagaaaaatg 106  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  22954664 ttctttgtgttgtgcaggtctctatttatagagtgaggttgaggct--agggtttgttaaatacgagcataaaagctgtggcttgaggagaagaaaaagg 22954567  T
Q  107 tacttctgttcctgaacttgtgattgatgcgcgtgaactggactggaactgtctctgaggcgtgtgacatgctgtatggattggatgaggatga 200  Q
    || ||| |||||||||||||||| ||||||||||||| |||| ||| |||| ||||     |||||||| ||||| |  |||||||||||||||    
T  22954566 tatttccgttcctgaacttgtgactgatgcgcgtgaattggattgggactgcctct-----gtgtgacaggctgtgtaaattggatgaggatga 22954478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 22940769 - 22940583
Alignment:
Q  8 ttctgtgtgctgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaa-tacgagcataaaagatgtggcttgaggagaagaaaaatg 106  Q
    |||| |||| ||||||||||||||||||||||||||||||||| |   |||||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  22940769 ttctttgtgttgtgcaggtctctatttatagagtgaggttgaggcc--agggtttgttaaatacgagcataaaagctgtggcttgaggagaagaaaaagg 22940672  T
Q  107 tacttctgttcctgaacttgtgattgatgcgcgtgaactggactggaactgtctctgaggcgtgtgacatgctgtatggattggatgaggatga 200  Q
    || ||| |||||||||||||||| ||||||||||||| |||| ||| |||| ||||     |||||||| ||||| |  |||||||||||||||    
T  22940671 tatttccgttcctgaacttgtgactgatgcgcgtgaattggattgggactgcctct-----gtgtgacaggctgtgtaaattggatgaggatga 22940583  T

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Target: scaffold0032 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 28726 - 28842
Alignment:
Q  115 ttcctgaacttgtgattgatgcgcgtgaactggactggaactgtctctgaggcgtgtgacatgctgtatggattggatgaggatgaggatgaatgaaaga 214  Q
    |||||||| ||||||| ||| |||||||||| || ||||||   |||  |||||||||||| | ||| | | ||||||||||||||| | | ||||||||    
T  28726 ttcctgaatttgtgatggatacgcgtgaactagattggaaccaactcataggcgtgtgacaggttgtgtaggttggatgaggatgagaaaggatgaaaga 28825  T
Q  215 aggctgtttgtgattga 231  Q
    ||||||  |||||||||    
T  28826 aggctgcgtgtgattga 28842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 7786983 - 7786898
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaat-acgagcataaaagatgtggcttgaggagaagaaaaa 104  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| | | ||||| |||||  |||||||| |||| |||||||    
T  7786983 tgtgcaggtctctatttatagagtgaggttgag--gctagggtttgttactgatgagcaaaaaagcagtggcttgtggaggagaaaaa 7786898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 7794833 - 7794748
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaat-acgagcataaaagatgtggcttgaggagaagaaaaa 104  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| | | ||||| |||||  |||||||| |||| |||||||    
T  7794833 tgtgcaggtctctatttatagagtgaggttgag--gctagggtttgttactgatgagcaaaaaagcagtggcttgtggaggagaaaaa 7794748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 7254566 - 7254608
Alignment:
Q  8 ttctgtgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  7254566 ttctttgtgttgtgcaggtctctatttatagagtgaggttgag 7254608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 7262008 - 7262050
Alignment:
Q  8 ttctgtgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  7262008 ttctttgtgttgtgcaggtctctatttatagagtgaggttgag 7262050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 23576987 - 23577024
Alignment:
Q  13 tgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||||||||||||||||||||||||||||||||    
T  23576987 tgtgttgtgcaggtctctatttatagagtgaggttgag 23577024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 5435215 - 5435252
Alignment:
Q  13 tgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  5435215 tgtgttgtgcagggctctatttatagagtgaggttgag 5435252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 5449035 - 5449072
Alignment:
Q  13 tgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  5449035 tgtgttgtgcagggctctatttatagagtgaggttgag 5449072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 11939169 - 11939215
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  11939169 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 11939215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 11953093 - 11953139
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  11953093 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 11953139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17948539 - 17948507
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  17948539 tgtgcaggtctctatttatagagtgagtttgag 17948507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17962429 - 17962397
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  17962429 tgtgcaggtctctatttatagagtgagtttgag 17962397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31511711 - 31511679
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  31511711 tgtgcaggtctctatttatagagtgagtttgag 31511679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31525835 - 31525803
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  31525835 tgtgcaggtctctatttatagagtgagtttgag 31525803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 36370839 - 36370871
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  36370839 tgtgcaggtctctatttatagagtgagtttgag 36370871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 36384767 - 36384799
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  36384767 tgtgcaggtctctatttatagagtgagtttgag 36384799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 36995502 - 36995534
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  36995502 tgtgcaggtctctatttatagagtgagtttgag 36995534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 37009440 - 37009472
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  37009440 tgtgcaggtctctatttatagagtgagtttgag 37009472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 6194527 - 6194442
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaat-acgagcataaaagatgtggcttgaggagaagaaaaa 104  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| | | ||||| |||||  |||||||| |||| |||||||    
T  6194527 tgtgcaggtctctatttatagagtgaggttgag--gctagggtttgttactgatgagcaaaaaagcagtggcttgtggaggagaaaaa 6194442  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 6202110 - 6202025
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgttaat-acgagcataaaagatgtggcttgaggagaagaaaaa 104  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| | | ||||| |||||  |||||||| |||| |||||||    
T  6202110 tgtgcaggtctctatttatagagtgaggttgag--gctagggtttgttactgatgagcaaaaaagcagtggcttgtggaggagaaaaa 6202025  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 15923751 - 15923689
Alignment:
Q  144 ctggactggaactgtctctgaggcgtgtgacatgctgtatggattggatgaggatgaggatga 206  Q
    ||||| |||||||| |||||||||||| |||| ||||| | || |||||||||||||||||||    
T  15923751 ctggattggaactgcctctgaggcgtgagacaggctgtgtagactggatgaggatgaggatga 15923689  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 20603545 - 20603591
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  20603545 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 20603591  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 37255649 - 37255695
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  37255649 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 37255695  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 37265482 - 37265528
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  37265482 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 37265528  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 11629479 - 11629511
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  11629479 tgtgcaggtctctatttatagagtgagtttgag 11629511  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 16728340 - 16728383
Alignment:
Q  7 cttctgtgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  16728340 cttctttgtgttgtgcaggtctctatttatagagtgaggttgag 16728383  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 16720317 - 16720359
Alignment:
Q  7 cttctgtgtgctgtgcaggtctctatttatagagtgaggttga 49  Q
    ||||| |||| ||||||||||||||||||||||||||||||||    
T  16720317 cttctttgtgttgtgcaggtctctatttatagagtgaggttga 16720359  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 18965093 - 18965130
Alignment:
Q  13 tgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18965093 tgtgttgtgcaggtctctatttatagagtgaggttgag 18965130  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9131261 - 9131307
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  9131261 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 9131307  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9145094 - 9145140
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  9145094 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 9145140  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 615477 - 615509
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  615477 tgtgcaggtctctatttatagagtgagtttgag 615509  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 623398 - 623430
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  623398 tgtgcaggtctctatttatagagtgagtttgag 623430  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 8276045 - 8276013
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  8276045 tgtgcaggtctctatttatagagtgagtttgag 8276013  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 16816413 - 16816445
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  16816413 tgtgcaggtctctatttatagagtgagtttgag 16816445  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 16825168 - 16825200
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  16825168 tgtgcaggtctctatttatagagtgagtttgag 16825200  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 202232 - 202269
Alignment:
Q  13 tgtgctgtgcaggtctctatttatagagtgaggttgag 50  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  202232 tgtgttgtgcaggtctctatttatacagtgaggttgag 202269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 12307210 - 12307256
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgagactctagggtttgtta 66  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||    
T  12307210 tgtgcaggtctctatttatagagtgagtttgag--gctagggtttgtta 12307256  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 15707646 - 15707614
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  15707646 tgtgcaggtctctatttatagagtgagtttgag 15707614  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 402 - 434
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  402 tgtgcaggtctctatttatagagtgagtttgag 434  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 20711 - 20679
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  20711 tgtgcaggtctctatttatagagtgagtttgag 20679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 34452 - 34420
Alignment:
Q  18 tgtgcaggtctctatttatagagtgaggttgag 50  Q
    ||||||||||||||||||||||||||| |||||    
T  34452 tgtgcaggtctctatttatagagtgagtttgag 34420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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