View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_303 (Length: 230)
Name: NF10233A_low_303
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_303 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 48569212 - 48569421
Alignment:
| Q |
1 |
aaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttggtct |
100 |
Q |
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| T |
48569212 |
aaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttggtct |
48569311 |
T |
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| Q |
101 |
actcttggaaggttgacatcttct-gaaataccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttctgtgtgaaaat |
199 |
Q |
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| T |
48569312 |
actcttggaaggttgacatcttctggaaataccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttc--tgtgaaaat |
48569409 |
T |
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| Q |
200 |
tgattatgaatt |
211 |
Q |
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|||||||||||| |
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| T |
48569410 |
tgattatgaatt |
48569421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 10821872 - 10821749
Alignment:
| Q |
1 |
aaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa--ttatggtactttggt |
98 |
Q |
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| T |
10821872 |
aaatgctccgatggcccatacggttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaattttgtggtacttcaat |
10821773 |
T |
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| Q |
99 |
ctactcttggaaggttgacatctt |
122 |
Q |
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| T |
10821772 |
ctactattggaaggttgacatctt |
10821749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36145514 - 36145584
Alignment:
| Q |
1 |
aaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
71 |
Q |
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||||||||| ||||||||||| |||||||||||||| ||||| || ||||||| ||||||||||||||| |
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| T |
36145514 |
aaatgctccgatggcccatattgttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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