View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_305 (Length: 230)
Name: NF10233A_low_305
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_305 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 5870349 - 5870139
Alignment:
| Q |
19 |
ccagagaaaagttaaatagggggaacaaaaaactgatttttaaagtagggagaccaaaactttgatgnnnnnnnaaattcaggggaccaaaatgcattta |
118 |
Q |
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| T |
5870349 |
ccagagaaaagttaaatagggggaacaaaaaactgatttttaaagtagggagaccaaaactttgatgtttttttaaatttaggggaccaaaatgcattta |
5870250 |
T |
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| Q |
119 |
agacttaaatatatttaatcgtaactcgtacgtacttatctcttatggagagctgacctttggttgctgttgtacagggggaggggacactacttgcaac |
218 |
Q |
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| T |
5870249 |
agact-aaatatatttaatcgtaactcgtacgtacttatctcttatggagagctgacctttggttgctgttgtacagggggaggggacactacttgcaac |
5870151 |
T |
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| Q |
219 |
cggttcttatga |
230 |
Q |
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|||||||||||| |
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| T |
5870150 |
cggttcttatga |
5870139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 5854272 - 5854150
Alignment:
| Q |
111 |
tgcatttaagacttaaatatatttaatcgtaactcgtacgtacttatctcttatggagagc-tgacctttggttgctgt--tgtacagggggaggggaca |
207 |
Q |
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||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||||||| | ||| ||||||||||||||||||| |
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| T |
5854272 |
tgcatttaaaacttaaatatatttaatagtaactcgtaattacttatatcttatggagagcctgacctttggtgggtgtgttgtacagggggaggggaca |
5854173 |
T |
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| Q |
208 |
ctacttgcaaccggttcttatga |
230 |
Q |
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| T |
5854172 |
ctacttgcaaccggtgcttatga |
5854150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 5276240 - 5276284
Alignment:
| Q |
33 |
aatagggggaacaaaaaactgatttttaaagtagggagaccaaaa |
77 |
Q |
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| T |
5276240 |
aatagggggagcaaaaaactgatttttaaaatagggagatcaaaa |
5276284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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