View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_308 (Length: 230)
Name: NF10233A_low_308
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_308 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37821473 - 37821240
Alignment:
| Q |
1 |
tgtaatactattcatctcttacatatataattatca------------tacataactatagcattttattaatgatatatgttaagagcaattccaaaac |
88 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
37821473 |
tgtaatactattcatctcttacatatataattatcacaccctttatcatacataactatagcattttaataatgatat--gttaagagcaattccaaaac |
37821376 |
T |
|
| Q |
89 |
tcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctacaaagt |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37821375 |
tcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctacaaagt |
37821276 |
T |
|
| Q |
189 |
tttaaatttttggtgtcattggtctcctatcatttc |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37821275 |
tttaaatttttggtgtcattggtctcctatcatttc |
37821240 |
T |
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