View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_31 (Length: 401)
Name: NF10233A_low_31
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 401
Target Start/End: Complemental strand, 29536039 - 29535642
Alignment:
| Q |
4 |
tatggtgagggagatgtcggggatgaagtcaagggtgtatacggatgtaggaagaagttgtgtgatactaatagagtgaaggttgtgaatccagagttga |
103 |
Q |
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| T |
29536039 |
tatggtgagggagatgtcggggatgaagtcaagagtgtatacggatgtaggaagaagttgtgtgatactaatagagtgaaggttgtgaatccagagttga |
29535940 |
T |
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| Q |
104 |
atgcgactgaactcgaaaaggtatatgagtatatagatgggaggaagtcgtgtggtactaataaaatgaaggacacaaattttgtgtctaatatggccaa |
203 |
Q |
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| T |
29535939 |
atgcgtctgaactcgaaaaggtatatgagtatatagatgggaggaagtcgtgtggtactaataaaatgaaggacacgaatcttgtgtctaatatggccaa |
29535840 |
T |
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| Q |
204 |
gaaagttgagagtgaaggactagttgacgtgcttatgcaggattgtaagacgaatgagactagtctcagaaagttggttaaccaaaatgctgcaatggaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29535839 |
gaaagttgagagtgaaggactagttgacgtgcttatgcaggattgtaagacgaatgagactagtctcagaaagttggttaaccaaaatgctgcaatggaa |
29535740 |
T |
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| Q |
304 |
ataatggatgatgtatccgatgtagcaaacagcatgcctggattgtcagatggaagcaagagttgtgctaatgatgacgccaatgacagtggcgatga |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29535739 |
ataatggatgatgtatccgatgtagcaaacagcatgcctggattgtcagatggaagcaagagttgtgctaatgatgacgccaatgacagtggcgatga |
29535642 |
T |
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