View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_312 (Length: 230)
Name: NF10233A_low_312
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_312 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2727699 - 2727475
Alignment:
| Q |
1 |
tgtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaattaaaagtcagacaaatgtgatggtttgtgatcggttgacgcta |
100 |
Q |
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| T |
2727699 |
tgtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaattaaaagtcagacaaatgtgatggtttgtgatcggttgacgcta |
2727600 |
T |
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| Q |
101 |
tagaaagttttacactgatagtacataaaaattattctctaagtaatgagttagttgttatgatttgtttgaataaaaaggttaattaagcacttattag |
200 |
Q |
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| T |
2727599 |
tagaaagttttacactgatagtacataaaaattattctctaagtaatgagttagttgttatgatttgtttgaataaaaaggttaattaagcacttattag |
2727500 |
T |
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| Q |
201 |
attagtgttgatgtatagactattt |
225 |
Q |
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| T |
2727499 |
attagtgttgatgtatagactattt |
2727475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40264014 - 40263923
Alignment:
| Q |
1 |
tgtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaatt-aaaagtcagacaaatgtgatggtttgtgatcggtt |
93 |
Q |
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| T |
40264014 |
tgtcagtcaatcataactgttcgatcactaaaaagtttgactttcatcatatctaattaaaaagtcttacaaa--tgatggattgtgatcggtt |
40263923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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