View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_318 (Length: 229)
Name: NF10233A_low_318
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_318 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 21002632 - 21002404
Alignment:
| Q |
1 |
tgattacaaatctaaggaagaccttctaaccgaaatttatatattcgatttgtcaaacactttgagctccatagtttgaaaaactctgctcatgtatggg |
100 |
Q |
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| T |
21002632 |
tgattacaaatctaagtaagaacttataaccgaaatttatatattcgatttgtcaaacactttgagctccatagtttgaaaaactctgctcatgtatgag |
21002533 |
T |
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| Q |
101 |
ttctgatttgtatttaattgttgtcaattagaatgggaaaagcagaaattcaaatgactcagggtgttagtaatatatctggacataattatgtaccctt |
200 |
Q |
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| T |
21002532 |
ttttgatttgtatttaattgttgtcaattagaatgggaaaagcagaaattcaaatgactcagggtgttagtaatatatctggacataattttgtatcctt |
21002433 |
T |
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| Q |
201 |
gatagatgatcttctgaacactaagagga |
229 |
Q |
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| T |
21002432 |
gatagatgatcttctgaacactaagagga |
21002404 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 950288 - 950187
Alignment:
| Q |
127 |
attagaatgggaaaagcagaaattcaaatgactcagggtgttagtaatatatctggacataattatgtacccttgatagatgatcttctgaacactaaga |
226 |
Q |
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| T |
950288 |
attaggatgcgaaatgcagaaattcgtgtgacacatggtgttagtagtatatctggacataattttgttcctttgagcaatgatcttctcaacactagga |
950189 |
T |
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| Q |
227 |
gg |
228 |
Q |
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| T |
950188 |
gg |
950187 |
T |
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