View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_319 (Length: 229)
Name: NF10233A_low_319
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_319 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 42975796 - 42975986
Alignment:
| Q |
21 |
ataaacattagtaccggtattttttagttcgatgaatcgaagcaacgagggttgaatttcattatacgagaattcaacttacaattgttccaagcataag |
120 |
Q |
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| T |
42975796 |
ataaacattagtaccggtattttttagttcgatgaatcgaagcaacaagggttgaatttcattatacgagaattcaacttacaattgttccaagcataag |
42975895 |
T |
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| Q |
121 |
gattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggacc |
211 |
Q |
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| T |
42975896 |
gattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggacc |
42975986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 42981769 - 42981883
Alignment:
| Q |
97 |
acttacaattgttccaagcataaggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatgga |
196 |
Q |
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| T |
42981769 |
acttacaattgttccaagcataacgattcaagaaaagtgatttgccatcaggcctaatacgaaaaggaccaatttcttcagaagcaccataagcaataga |
42981868 |
T |
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| Q |
197 |
agaacaaccaggacc |
211 |
Q |
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| T |
42981869 |
agaacaaccaggacc |
42981883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 26633875 - 26633821
Alignment:
| Q |
157 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggacc |
211 |
Q |
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| T |
26633875 |
gaaaaggaccaatttcctcagcttcaccataagcaatagaagaacaaccaggacc |
26633821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 26641340 - 26641286
Alignment:
| Q |
157 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggacc |
211 |
Q |
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|||||||||||||||| || | ||||||||||||| ||||||||||||||||| |
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| T |
26641340 |
gaaaaggaccaatttcctcagcttcaccataagcaatagaagaacaaccaggacc |
26641286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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