View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_326 (Length: 228)
Name: NF10233A_low_326
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_326 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 42331074 - 42330877
Alignment:
| Q |
16 |
tggacatctgccaggccttaatagcgtaagtgaaatcaaagaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattg |
115 |
Q |
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||||||||| |||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42331074 |
tggacatctaccaggcctgaatagcgtaagggaaagcaaagataaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattg |
42330975 |
T |
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| Q |
116 |
cacgcctttgtctcgtaactggttcctagttggcaacactcctctgcagacgcgccacacaaagtttttgatttttggagggacttttaaacaccaaa |
213 |
Q |
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| T |
42330974 |
cacgcctttgtctcgtaactggttcctagttggcagcactcttctgcagacacgccacacaaagtttttgatttttggagggacttttaaacgccaaa |
42330877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 51109855 - 51109660
Alignment:
| Q |
17 |
ggacatctgccaggccttaatagcgtaagtgaaatcaaagaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattgc |
116 |
Q |
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| T |
51109855 |
ggacatctgccaggcctgaatagcgtaagggcaatcaaagaaaaggtgtgacacatcctcccttgttgatggacatataaca-acgcttctggacattgc |
51109757 |
T |
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| Q |
117 |
acgcctttgtctcgtaactggttcctagttggcaacactcctctgcagacgcgccacacaaagtttttgatttttggagggacttttaaacaccaaa |
213 |
Q |
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| T |
51109756 |
acgcctttgtctcgtaaccggttcctagttggcagcactcctctgcagacgcgccacacaaagtttttgatttttggagggacttttaaacgccaaa |
51109660 |
T |
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Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 11604974 - 11605170
Alignment:
| Q |
17 |
ggacatctgccaggccttaatagcgtaagtgaaatcaaagaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattgc |
116 |
Q |
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||||||||| || |||| |||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11604974 |
ggacatctgacatgcctgaatagcataagggcaagcaaagaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattgc |
11605073 |
T |
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| Q |
117 |
acgcctttgtctcgtaactggttcctagttggcaacactcctctgcagacgcgccacacaaagtttttgatttttggagggacttttaaacaccaaa |
213 |
Q |
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| T |
11605074 |
acacctttgtctcgtaattggtttctagttggcagcactcctctgcagacgtgccacacaaagtttttgatttttggagggacttttaaacaccaaa |
11605170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 40063973 - 40064131
Alignment:
| Q |
55 |
agaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattgcacgcctttgtctcgtaactggttcctagttggcaacac |
154 |
Q |
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|||||||||| ||||||||| ||||||| || ||| ||||||||||||| |||||||||||||| ||||| |||| || ||| |||||||||| ||| |
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| T |
40063973 |
agaaaaggtgcttcacatcctcacttgttgttgaacaattaacacacgcttccggacattgcacgcccttgtcacgtagcttgtttctagttggcagcac |
40064072 |
T |
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| Q |
155 |
tcctctgcagacgcgccacacaaagtttttgatttttggagggacttttaaacaccaaa |
213 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||| |
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| T |
40064073 |
ccctctgcagacgcgccacataaagtttttgatttttggaggaactttcaaacgccaaa |
40064131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 19584992 - 19584892
Alignment:
| Q |
17 |
ggacatctgccaggccttaatagcgtaagtgaaatcaaagaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattgc |
116 |
Q |
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||||||||||||||| | ||||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19584992 |
ggacatctgccaggcttgaatagtgtaagggcaagcaaagaaaaggtgtgacacatcctcccttgttgctggacatataacacacgcttctggacattgc |
19584893 |
T |
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| Q |
117 |
a |
117 |
Q |
| |
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| |
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| T |
19584892 |
a |
19584892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 21250442 - 21250586
Alignment:
| Q |
69 |
acatcctcccttgttgctggacatataacacacgcttctggacattgcacgcctttgtctcgtaactggttcctagttggcaacactcctctgcagacgc |
168 |
Q |
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|||||||| |||||||||||||| ||||||||||||| |||||||||| || || || |||| |||||| |||||||||| ||| ||||||||||||| |
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| T |
21250442 |
acatcctcacttgttgctggacaattaacacacgcttccagacattgcacacccttctcacgtagctggtttctagttggcagcacccctctgcagacgc |
21250541 |
T |
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| Q |
169 |
gccacacaaagtttttgatttttggagggacttttaaacaccaaa |
213 |
Q |
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||||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
21250542 |
accacataaagtttttgatttttggaggaacttttaaacgccaaa |
21250586 |
T |
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