View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_327 (Length: 227)

Name: NF10233A_low_327
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_327
NF10233A_low_327
[»] chr2 (4 HSPs)
chr2 (64-218)||(12843342-12843496)
chr2 (64-136)||(12861985-12862057)
chr2 (64-135)||(13125763-13125834)
chr2 (159-206)||(13125540-13125587)
[»] chr5 (1 HSPs)
chr5 (20-68)||(41659940-41659988)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 12843496 - 12843342
Alignment:
Q  64 agtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12843496 agtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaa 12843397  T
Q  164 tcatatagtgtttgatattagtcttgttgagtattgcacttatattgttcgacat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  12843396 tcatatagtgtttgatattagtcttgttgagtattgcacttattttgtttgacat 12843342  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 12861985 - 12862057
Alignment:
Q  64 agtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  12861985 agtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta 12862057  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 13125834 - 13125763
Alignment:
Q  64 agtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt 135  Q
    ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  13125834 agtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt 13125763  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
Q  159 tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat 206  Q
    |||||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  13125587 tagaataatacagtgtttgattttagtgttgttgagtattgcacttat 13125540  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 41659940 - 41659988
Alignment:
Q  20 cagaagcaaccactgtcaacgtatagaaacagagggaagagtaaagtgt 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41659940 cagaagcaaccactgtcaacgtatagaaacagagggaagagtaaagtgt 41659988  T

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