View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_329 (Length: 227)
Name: NF10233A_low_329
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_329 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 124788 - 124568
Alignment:
| Q |
7 |
aatgagatggacatcaaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccac |
106 |
Q |
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| T |
124788 |
aatgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgttgcaacaactatcgatagcatcgataaacatgacatacccaaaccac |
124689 |
T |
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| Q |
107 |
cattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaa |
206 |
Q |
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| T |
124688 |
cattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaa |
124589 |
T |
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| Q |
207 |
tgcattttgtatttaatacga |
227 |
Q |
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| T |
124588 |
tgcattttgtatttaatacga |
124568 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 23699885 - 23699791
Alignment:
| Q |
82 |
gacaaacatgacatacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaat |
176 |
Q |
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| T |
23699885 |
gacaaacatgacatacctagaccatcattcagtttcaaggagtttgatgagatcaagaagggaatagtaaggccagatgtccttataggtaaaat |
23699791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 22079639 - 22079490
Alignment:
| Q |
22 |
aaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccaccattctgcttcaagg |
121 |
Q |
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||||||||| ||||| ||| || |||||||||||| || ||||| | |||| | ||| ||||| |||||||| ||||||||| | ||| ||| |||| |
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| T |
22079639 |
aaagcaactgatcatccattttggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatctttcaactttaagg |
22079540 |
T |
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| Q |
122 |
aatttgatatgataaagaagggcgtactaaggcccgatgtccttataggt |
171 |
Q |
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| T |
22079539 |
actttgatgagatcaagaagggagcactaaggccagatgtcctaataggt |
22079490 |
T |
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