View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_330 (Length: 227)

Name: NF10233A_low_330
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_330
NF10233A_low_330
[»] chr2 (3 HSPs)
chr2 (48-225)||(20659425-20659602)
chr2 (1-32)||(20659379-20659410)
chr2 (95-225)||(44884527-44884657)
[»] chr3 (3 HSPs)
chr3 (93-225)||(49640850-49640982)
chr3 (84-223)||(31662702-31662841)
chr3 (84-223)||(31933555-31933694)
[»] chr7 (4 HSPs)
chr7 (115-225)||(17244245-17244355)
chr7 (96-223)||(13016742-13016869)
chr7 (90-225)||(41599276-41599411)
chr7 (87-223)||(8120579-8120715)
[»] chr6 (2 HSPs)
chr6 (48-223)||(26905717-26905892)
chr6 (138-225)||(20928390-20928477)
[»] chr4 (1 HSPs)
chr4 (174-222)||(14262350-14262398)
[»] chr8 (1 HSPs)
chr8 (115-225)||(14503991-14504101)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 20659425 - 20659602
Alignment:
Q  48 tgtagcataaatgtccctgatcctcttaaacagacaattacagacattcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttcta 147  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20659425 tgtagcagaaatgtccttgatcctcttaaacagacaattacagacattctaggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttcta 20659524  T
Q  148 tgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtgtttggccgaaaattaattcttggagtggta 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20659525 tgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtgtttggccgaaaattaattcttggagtggta 20659602  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 20659379 - 20659410
Alignment:
Q  1 aaacaacatctggtcaagctataagcttacct 32  Q
    ||||||||||||||||||||||||||||||||    
T  20659379 aaacaacatctggtcaagctataagcttacct 20659410  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 44884527 - 44884657
Alignment:
Q  95 tcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgt 194  Q
    |||||||||||| || ||  |||||||  | |||||||  || ||||||||||||||| |  || |||| |||||||| ||||| | ||| || || ||     
T  44884527 tcttggagttcaggttgttttgggcacaagtaaatatccgggtttaccttctatgataagtcgagatcgtaatgcaacgtttgcttatataaaggatcgc 44884626  T
Q  195 gtttggccgaaaattaattcttggagtggta 225  Q
    || |||| ||||||||||| |||||||||||    
T  44884627 gtgtggcagaaaattaattattggagtggta 44884657  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 49640850 - 49640982
Alignment:
Q  93 attcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaagacc 192  Q
    |||||||||||||| || ||  ||||||| || |||||||| || ||||||| ||||||| |  || |||| |||||||| ||||| | ||| || || |    
T  49640850 attcttggagttcaggttgttttgggcacaggtaaatatctgggtttaccttatatgataagtcgagatcgtaatgcaacgtttgcttatataaaggatc 49640949  T
Q  193 gtgtttggccgaaaattaattcttggagtggta 225  Q
    | || |||| |||||||||||||||||||||||    
T  49640950 gcgtgtggcagaaaattaattcttggagtggta 49640982  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 31662841 - 31662702
Alignment:
Q  84 attacagacattcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgccttta 183  Q
    ||||| || |||||||| |||||||| ||  |||| || || |||||||| ||| | |||||||||||| || || | || || || |||||||| | ||    
T  31662841 attactgaaattcttggcgttcaagttgttttgggtacaggtaaatatctgggcctcccttctatgataggccgagaccgtaaagctacatttgcgtata 31662742  T
Q  184 ttaaagaccgtgtttggccgaaaattaattcttggagtgg 223  Q
    |||| || || ||||||| |||||||||||| ||||||||    
T  31662741 ttaaggatcgcgtttggcagaaaattaattcctggagtgg 31662702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 31933555 - 31933694
Alignment:
Q  84 attacagacattcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgccttta 183  Q
    ||||| || |||||||| |||||||| ||  |||| || || |||||| | ||| | |||||||||||| || || | || || || |||||||| | ||    
T  31933555 attactgaaattcttggcgttcaagttgttttgggtacaggtaaatatatgggcctcccttctatgataggccgagaccgtaaagctacatttgcgtata 31933654  T
Q  184 ttaaagaccgtgtttggccgaaaattaattcttggagtgg 223  Q
    |||| || || ||||||| |||||||||||| ||||||||    
T  31933655 ttaaggatcgcgtttggcagaaaattaattcctggagtgg 31933694  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 17244355 - 17244245
Alignment:
Q  115 tgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtgtttggccgaaaattaattc 214  Q
    ||||||| || |||||||| || ||||||||||||||| |  || |||| |||||||| ||||| | ||| || || || || |||| ||||||||||||    
T  17244355 tgggcacaggtaaatatctgggtttaccttctatgataagtcgagatcgtaatgcaacgtttgcttatataaaggatcgggtgtggcagaaaattaattc 17244256  T
Q  215 ttggagtggta 225  Q
    |||||||||||    
T  17244255 ttggagtggta 17244245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 13016869 - 13016742
Alignment:
Q  96 cttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtg 195  Q
    |||||||| ||||| || |||||||| || || |||||||| ||||||| ||||||  || || | || || ||||| ||||| | ||| ||||||||||    
T  13016869 cttggagtacaagtggtgatgggcacaggtaagtatcttggattaccttttatgattggccgagaccgtaacgcaacttttgcttatatcaaagaccgtg 13016770  T
Q  196 tttggccgaaaattaattcttggagtgg 223  Q
    | |||   ||||||||||||||||||||    
T  13016769 tgtggaacaaaattaattcttggagtgg 13016742  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 41599276 - 41599411
Alignment:
Q  90 gacattcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaag 189  Q
    ||||||||||| |||||| | ||  |||| || || |||||||| ||| |||||||||||||| || || | ||||| || || ||||| | |||||| |    
T  41599276 gacattcttggtgttcaaattgttttgggtacaggtaaatatctgggcctaccttctatgataggccgagaccgcaaagctacgtttgcatatattaagg 41599375  T
Q  190 accgtgtttggccgaaaattaattcttggagtggta 225  Q
    | || ||||||| |||||||||||  ||||||||||    
T  41599376 atcgcgtttggcagaaaattaattactggagtggta 41599411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 8120715 - 8120579
Alignment:
Q  87 acagacattcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttatta 186  Q
    |||||||||||||| |||||||| ||  | || ||  | |||||||||||| ||||||||||||||||| |  | ||||| || || ||||| | |||||    
T  8120715 acagacattcttggcgttcaagttgttttaggtacaagtaaatatcttggcctaccttctatgatatgcagggaccgcaaagctacttttgcgtatatta 8120616  T
Q  187 aagaccgtgtttggccgaaaattaattcttggagtgg 223  Q
    | || |||||||||   |||||| |||| ||||||||    
T  8120615 aggatcgtgtttggaaaaaaattcattcctggagtgg 8120579  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 26905717 - 26905892
Alignment:
Q  48 tgtagcataaatgtccctgatcctcttaaacagacaattacagacattcttggagttcaagtagtaatgggcacgggaaaatatcttggcttaccttcta 147  Q
    ||||||| ||||||||| |||||||| |||||||  ||||| |  |||||||| || ||||| ||  |||||||  | || || ||||| ||||||||||    
T  26905717 tgtagcaaaaatgtcccggatcctctcaaacagaacattactgctattcttggcgtacaagtggtgttgggcacatgtaagtaccttggtttaccttcta 26905816  T
Q  148 tgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtgtttggccgaaaattaattcttggagtgg 223  Q
    ||||  || || |||| ||| |||| ||||| |  || |||||| |||| ||||  ||| ||||||||||||||||    
T  26905817 tgattggccgagatcgtaatacaacttttgcatacatcaaagactgtgtgtggcataaagttaattcttggagtgg 26905892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 20928390 - 20928477
Alignment:
Q  138 ttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtgtttggccgaaaattaattcttggagtggta 225  Q
    ||||||||||||||| |  || | |||||| |||| ||| ||| ||| ||||| |||||||||| || ||| ||||||||||||||||    
T  20928390 ttaccttctatgataggtagagaccgcaattcaacgttttcctatatcaaagatcgtgtttggcagagaataaattcttggagtggta 20928477  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 14262350 - 14262398
Alignment:
Q  174 tttgcctttattaaagaccgtgtttggccgaaaattaattcttggagtg 222  Q
    ||||||| ||||||||||||||| |||| ||||||||| ||||||||||    
T  14262350 tttgcctatattaaagaccgtgtctggcagaaaattaactcttggagtg 14262398  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 14503991 - 14504101
Alignment:
Q  115 tgggcacgggaaaatatcttggcttaccttctatgatatgctgaaatcgcaatgcaacatttgcctttattaaagaccgtgtttggccgaaaattaattc 214  Q
    ||||||| || |||||| | |||||||||||||||||| |  || |||| ||||| || ||||| |  || || || |||||||||| |||||| |||||    
T  14503991 tgggcacaggtaaatatttgggcttaccttctatgataggtcgagatcgaaatgctacttttgcttacatcaaggatcgtgtttggcagaaaatcaattc 14504090  T
Q  215 ttggagtggta 225  Q
     ||||||||||    
T  14504091 ctggagtggta 14504101  T

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