View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_331 (Length: 227)

Name: NF10233A_low_331
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_331
NF10233A_low_331
[»] chr3 (4 HSPs)
chr3 (1-227)||(48384395-48384621)
chr3 (41-134)||(48397611-48397703)
chr3 (86-142)||(14145869-14145925)
chr3 (86-141)||(48364936-48364991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (86-144)||(27531-27589)
[»] chr1 (14 HSPs)
chr1 (94-144)||(49517025-49517075)
chr1 (86-144)||(25006091-25006149)
chr1 (92-144)||(15360849-15360901)
chr1 (86-142)||(30371105-30371161)
chr1 (95-146)||(34179938-34179989)
chr1 (85-144)||(44032055-44032114)
chr1 (86-144)||(27738237-27738295)
chr1 (86-144)||(49557096-49557154)
chr1 (99-144)||(1879097-1879142)
chr1 (13-78)||(25719760-25719825)
chr1 (86-126)||(7218131-7218171)
chr1 (28-84)||(9507314-9507370)
chr1 (86-142)||(28467364-28467420)
chr1 (86-134)||(30257648-30257696)
[»] chr8 (6 HSPs)
chr8 (85-142)||(34551077-34551134)
chr8 (86-134)||(34770857-34770905)
chr8 (13-84)||(1664452-1664523)
chr8 (15-78)||(9700090-9700153)
chr8 (86-144)||(42597356-42597414)
chr8 (86-134)||(2093244-2093292)
[»] scaffold0199 (1 HSPs)
scaffold0199 (13-84)||(6893-6964)
[»] chr5 (6 HSPs)
chr5 (92-142)||(583836-583886)
chr5 (102-144)||(10303756-10303798)
chr5 (94-144)||(14295461-14295511)
chr5 (108-144)||(35095862-35095898)
chr5 (92-144)||(35135725-35135777)
chr5 (111-155)||(39128583-39128627)
[»] chr2 (9 HSPs)
chr2 (86-144)||(42907314-42907372)
chr2 (86-139)||(11513858-11513911)
chr2 (86-144)||(29935958-29936016)
chr2 (86-144)||(37053549-37053607)
chr2 (15-76)||(15370241-15370302)
chr2 (86-134)||(33942115-33942163)
chr2 (86-126)||(35755559-35755599)
chr2 (57-144)||(39567858-39567945)
chr2 (94-134)||(43141836-43141876)
[»] chr4 (10 HSPs)
chr4 (95-144)||(8130129-8130178)
chr4 (92-144)||(4071837-4071889)
chr4 (85-131)||(927260-927306)
chr4 (92-134)||(13949907-13949949)
chr4 (86-144)||(49219094-49219152)
chr4 (86-144)||(54325094-54325152)
chr4 (27-84)||(6987671-6987728)
chr4 (86-142)||(10192241-10192297)
chr4 (12-88)||(11264380-11264456)
chr4 (86-158)||(29373944-29374016)
[»] chr7 (9 HSPs)
chr7 (86-142)||(1417221-1417277)
chr7 (89-144)||(35536062-35536117)
chr7 (8-66)||(431413-431471)
chr7 (86-144)||(27481351-27481409)
chr7 (86-144)||(49060495-49060553)
chr7 (95-144)||(23918912-23918961)
chr7 (86-158)||(9527147-9527219)
chr7 (94-134)||(27548228-27548268)
chr7 (159-195)||(46056149-46056185)
[»] chr6 (8 HSPs)
chr6 (94-133)||(5550098-5550137)
chr6 (87-142)||(22742323-22742378)
chr6 (86-144)||(4006669-4006727)
chr6 (110-144)||(29269851-29269885)
chr6 (94-143)||(281913-281962)
chr6 (95-144)||(29274295-29274344)
chr6 (92-144)||(24836262-24836314)
chr6 (22-98)||(26559164-26559239)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48384395 - 48384621
Alignment:
Q  1 ttgcttgtaagagtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttatagaaaataacttatag 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384395 ttgcttgtaagagtctgtttagattaactaaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttatagaaaataacttatag 48384494  T
Q  101 cttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatattgataaatgcttaattaagttgtttatctaaccatggcctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  48384495 cttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatattgataaatgcttaattaagttgtttatctacccatgacctat 48384594  T
Q  201 gtgtattttcccttctccttgttttga 227  Q
    |||||||||||||||||||||||||||    
T  48384595 gtgtattttcccttctccttgttttga 48384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 48397703 - 48397611
Alignment:
Q  41 atctactagcttaatcatttgtgagactctttgggagaccttatagaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    |||||||||| ||| ||||||||||| | ||||| ||| || || ||||| ||||||||||||||||  ||||||||||||||||| |||||||    
T  48397703 atctactagcataagcatttgtgagattgtttggaagagctaat-gaaaacaacttatagcttaaataaaaacaatttgactttattttatctt 48397611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 14145925 - 14145869
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    |||||||||||||||| || | | ||||||||| ||||||| |||||||||||||||    
T  14145925 gaaaataacttatagcatatacgaaaacaatttaactttattttatcttctgttata 14145869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 48364936 - 48364991
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttat 141  Q
    ||||| ||||||| || |||||| ||||||||||||||||| ||||||| ||||||    
T  48364936 gaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttat 48364991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 27589 - 27531
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||    
T  27589 gaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttataga 27531  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 49517075 - 49517025
Alignment:
Q  94 cttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  49517075 cttatagcttaaatgaaaacaatttgactttattttatcttttgttataga 49517025  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 25006091 - 25006149
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||    
T  25006091 gaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttataga 25006149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 15360901 - 15360849
Alignment:
Q  92 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  15360901 aacttatagcttatatgaaaacagtttgactttattttatcttttgttataga 15360849  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 30371161 - 30371105
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||| ||||||| |||||||    
T  30371161 gaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 34179938 - 34179989
Alignment:
Q  95 ttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatt 146  Q
    |||||||||| ||  ||||||||||||||||| ||||||| |||||||||||    
T  34179938 ttatagcttagattaaaacaatttgactttattttatcttttgttatagatt 34179989  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 44032055 - 44032114
Alignment:
Q  85 agaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||  |||||||||| ||| ||||||||||||||||| ||| ||| |||||||||    
T  44032055 agaaaatagtttatagcttatatgaaaacaatttgactttattttagcttttgttataga 44032114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 27738237 - 27738295
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| || |||||||||| ||| ||||||||||||||||| ||||||| |||| ||||    
T  27738237 gaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgttgtaga 27738295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 49557154 - 49557096
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||||||| | || |||| ||||||| ||||||| |||||||||    
T  49557154 gaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttataga 49557096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 1879097 - 1879142
Alignment:
Q  99 agcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    |||||| ||| ||||| ||||||||||| |||||||||||||||||    
T  1879097 agcttatatgaaaacattttgactttattttatcttctgttataga 1879142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 25719825 - 25719760
Alignment:
Q  13 gtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggaga 78  Q
    |||||||| |||| | ||| ||||| |||| |||| |||||| ||||| |||||||||||||||||    
T  25719825 gtctgtttggattgatttatttgagtttatttactggcttaagcatttatgagactctttgggaga 25719760  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 7218131 - 7218171
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttat 126  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  7218131 gaaaacaacttatagcttatatgaaaacaatttgactttat 7218171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 9507370 - 9507314
Alignment:
Q  28 cttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 84  Q
    |||| ||||| |||||||||||| ||  ||||||||||||| ||||||||| |||||    
T  9507370 cttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 28467364 - 28467420
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    ||||| ||||| ||||||| ||| ||| ||||||||||||| ||||||| |||||||    
T  28467364 gaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 30257696 - 30257648
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||| |||||| |||||| ||||||||| ||||||||||| |||||||    
T  30257696 gaaaacaacttaaagcttatatggaaacagtttgactttattttatctt 30257648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 34551134 - 34551077
Alignment:
Q  85 agaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    |||||| |||||||| |||||||| |||||||||||||| |||||||||| |||||||    
T  34551134 agaaaacaacttataacttaaatgaaaacaatttgacttgatgttatcttttgttata 34551077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 34770905 - 34770857
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  34770905 gaaaacaacttatagcttaaatgaaaacaatttgactttattttatctt 34770857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 1664523 - 1664452
Alignment:
Q  13 gtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 84  Q
    ||||||||||||  ||||| ||||| |||||||||||| ||| || |||||||||| ||||||||| |||||    
T  1664523 gtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 1664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 9700153 - 9700090
Alignment:
Q  15 ctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggaga 78  Q
    |||||| |||||||||| ||||| |||||||||||| ||| || |||||||||| |||| ||||    
T  9700153 ctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagaga 9700090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 42597414 - 42597356
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||  ||| ||||||||| ||||||| ||||||| |||||||||    
T  42597414 gaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttataga 42597356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 2093292 - 2093244
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||| ||||||||||||||| | |||| |||||||||||| |||||||    
T  2093292 gaaaacaacttatagcttaaaagaaaaccatttgactttattttatctt 2093244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 6964 - 6893
Alignment:
Q  13 gtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 84  Q
    ||||||||||||  ||||| ||||| |||||||||||| ||| || |||||||||| ||||||||| |||||    
T  6964 gtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 583836 - 583886
Alignment:
Q  92 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    ||||||||||||| ||| ||||| ||||||||||| |||||||||||||||    
T  583836 aacttatagcttatatgaaaacagtttgactttattttatcttctgttata 583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 10303798 - 10303756
Alignment:
Q  102 ttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||    
T  10303798 ttaaatgaaaacaatttgactttattttatcttttgttataga 10303756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 14295511 - 14295461
Alignment:
Q  94 cttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  14295511 cttatagcttatatgaaaacagtttgactttattttatcttttgttataga 14295461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 35095862 - 35095898
Alignment:
Q  108 ggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  35095862 ggaaacaatttgactttattttatcttttgttataga 35095898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 35135725 - 35135777
Alignment:
Q  92 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||| ||| ||| | ||||||||||| ||||||| |||||||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttataga 35135777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 39128627 - 39128583
Alignment:
Q  111 aacaatttgactttatgttatcttctgttatagatttggcttata 155  Q
    |||||||||||||||| ||||||| ||||||||| || |||||||    
T  39128627 aacaatttgactttattttatcttttgttatagaattagcttata 39128583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 42907372 - 42907314
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||||| | ||||||||| ||||||| || ||||||||||||||    
T  42907372 gaaaacaacttatagcttaaacgaaaacaatttaactttattttttcttctgttataga 42907314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 11513911 - 11513858
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgtt 139  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  11513911 gaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 29936016 - 29935958
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||| |||||||||||||||| |||| |||| |  |||||||||    
T  29936016 gaaaaaaacttatagcttacatggaaacaatttgacgttattttatttgttgttataga 29935958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 37053607 - 37053549
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| |||||||| |||| ||| ||||| ||||||||||| |||| ||||||||||||    
T  37053607 gaaaaaaacttataacttatatgaaaacagtttgactttattttattttctgttataga 37053549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 15370241 - 15370302
Alignment:
Q  15 ctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttggga 76  Q
    |||||| |||| ||||| ||||| ||||||||| || ||| ||||||||||||| |||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggga 15370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 33942163 - 33942115
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||| ||||||||||||| ||| ||||| ||||||||||| |||||||    
T  33942163 gaaaacaacttatagcttacatgaaaacagtttgactttattttatctt 33942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 35755559 - 35755599
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttat 126  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  35755559 gaaaacaacttatagcttacatgaaaacaatttgactttat 35755599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 39567945 - 39567858
Alignment:
Q  57 atttgtgagac-tctttgggagaccttatagaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||| | ||||||| | ||||| ||||| | |||||||||||  | |||||||||| ||||||| ||||||| |||||||||    
T  39567945 atttgtgagacctgtttgggaaaacttat-gaaaacagcttatagcttatcttgaaacaatttaactttattttatcttttgttataga 39567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 43141876 - 43141836
Alignment:
Q  94 cttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||||||||| ||||||||||||||||||||  |||||||    
T  43141876 cttatagcttatatggaaacaatttgactttactttatctt 43141836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 8130178 - 8130129
Alignment:
Q  95 ttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    |||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  8130178 ttatagcttatatgaaaataatttgactttatgttatcttttgttataga 8130129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 4071889 - 4071837
Alignment:
Q  92 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||| ||| ||| ||||||||||||| ||||||| |||||||||    
T  4071889 aacttatagcttatatgaaaataatttgactttattttatcttttgttataga 4071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 927306 - 927260
Alignment:
Q  85 agaaaataacttatagcttaaatggaaacaatttgactttatgttat 131  Q
    |||||| |||||||| |||| ||||||||||||||||||||| ||||    
T  927306 agaaaacaacttataacttatatggaaacaatttgactttattttat 927260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 13949907 - 13949949
Alignment:
Q  92 aacttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||    
T  13949907 aacttatagcttatatgaaaacaatttgactttattttatctt 13949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 49219152 - 49219094
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||| ||| ||| ||||||||||||| |||| || |||||||||    
T  49219152 gaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttataga 49219094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 54325094 - 54325152
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||| ||||||||||| ||| ||||| ||||||||||| ||||||| ||| |||||    
T  54325094 gaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgtaataga 54325152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 6987671 - 6987728
Alignment:
Q  27 acttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 84  Q
    ||||||||||| |||||||||||| |||   ||||||||||| ||||||||| |||||    
T  6987671 acttaattgagtttatctactagcataagtgtttgtgagactgtttgggagagcttat 6987728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 10192297 - 10192241
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    ||||| |||||||| |||| ||| |||||||||||||||||  |||||| |||||||    
T  10192297 gaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttata 10192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 11264456 - 11264380
Alignment:
Q  12 agtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttatagaa 88  Q
    ||||||||| ||||  |||| |||||  ||||||||||| ||| ||| ||||||||| ||||||||| | |||||||    
T  11264456 agtctgtttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagcatatagaa 11264380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 29373944 - 29374016
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatat 158  Q
    ||||| || |||||||||| ||| | ||| |||||| |||| |||||||||||||||||  | ||||||||||    
T  29373944 gaaaacaaattatagcttatatgaatacattttgacattattttatcttctgttatagaaatagcttatatat 29374016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 1417277 - 1417221
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    ||||| ||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||    
T  1417277 gaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 35536117 - 35536062
Alignment:
Q  89 aataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    |||| |||||| |||| ||| ||||||||||||||||| ||||||| |||||||||    
T  35536117 aatagcttataacttatatgaaaacaatttgactttattttatcttatgttataga 35536062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 431471 - 431413
Alignment:
Q  8 taagagtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgaga 66  Q
    ||||||| |||||||||| ||||| |||||| ||||||||| | ||| |||||||||||    
T  431471 taagagtatgtttagattgacttatttgaggctatctactaacataaacatttgtgaga 431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 27481351 - 27481409
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||||||||| ||||||||| ||||||||  | ||||| | |||||||||    
T  27481351 gaaaataacttatagcttatatggaaacagtttgacttcgttttatcctttgttataga 27481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 49060553 - 49060495
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||||||||| ||  ||| ||||||||||||| |||| || |||||||||    
T  49060553 gaaaataacttatagcttatataaaaataatttgactttattttattttttgttataga 49060495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 23918961 - 23918912
Alignment:
Q  95 ttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||| |||||    
T  23918961 ttatagcttatatgaaaacaatttgactttattttatcttttgtaataga 23918912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 9527147 - 9527219
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatat 158  Q
    ||||| ||||||||| ||| ||| ||||| |||||||||||  |||||| |||||||||| | || |||||||    
T  9527147 gaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatat 9527219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 27548268 - 27548228
Alignment:
Q  94 cttatagcttaaatggaaacaatttgactttatgttatctt 134  Q
    ||||||||||||||| |||||||| |||||||| |||||||    
T  27548268 cttatagcttaaatgaaaacaattagactttattttatctt 27548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 46056149 - 46056185
Alignment:
Q  159 tgataaatgcttaattaagttgtttatctaaccatgg 195  Q
    |||||||||||||||||||||||||||| || |||||    
T  46056149 tgataaatgcttaattaagttgtttatccaaacatgg 46056185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 5550137 - 5550098
Alignment:
Q  94 cttatagcttaaatggaaacaatttgactttatgttatct 133  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  5550137 cttatagcttatatgaaaacaatttgactttatgttatct 5550098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 22742378 - 22742323
Alignment:
Q  87 aaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 142  Q
    |||||| ||||||||||| ||| ||||||||||||||||| ||||| | |||||||    
T  22742378 aaaatagcttatagcttatatgaaaacaatttgactttattttatcctttgttata 22742323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 4006727 - 4006669
Alignment:
Q  86 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||| ||||||||||||| ||  ||||||||||||||||| ||||| | |||||||||    
T  4006727 gaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttataga 4006669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 29269885 - 29269851
Alignment:
Q  110 aaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||||||||||| |||||||||||||||||    
T  29269885 aaacaatttgactttattttatcttctgttataga 29269851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 281913 - 281962
Alignment:
Q  94 cttatagcttaaatggaaacaatttgactttatgttatcttctgttatag 143  Q
    ||||||||||| ||| |||||| |||||||||| ||||||| ||||||||    
T  281913 cttatagcttatatgaaaacaagttgactttattttatcttttgttatag 281962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 29274295 - 29274344
Alignment:
Q  95 ttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    |||||||||| ||| ||||||||||||||||| ||||||| || ||||||    
T  29274295 ttatagcttatatgaaaacaatttgactttattttatcttttgctataga 29274344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 24836262 - 24836314
Alignment:
Q  92 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 144  Q
    ||||||||| ||| | | ||||||||||||||||| ||||||| |||||||||    
T  24836262 aacttatagtttatacgaaaacaatttgactttattttatcttttgttataga 24836314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 26559164 - 26559239
Alignment:
Q  22 gattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttatagaaaataacttat 98  Q
    |||||||||| ||||| ||| ||||| || ||| ||||||||||||| ||||| ||| ||||| ||||| |||||||    
T  26559164 gattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttat-gaaaacaacttat 26559239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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