View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_332 (Length: 227)
Name: NF10233A_low_332
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_332 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 23313682 - 23313491
Alignment:
| Q |
16 |
acatcaagtgttagtttcttcagacacttatccaatgccatgttgcttggtttccaccatagtttgacactctcagttttactttccaactctttgtcca |
115 |
Q |
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| T |
23313682 |
acatcaagtgttagtttcttcagacacttatccaatgccatgttgcttggtttccactatagtttgacactctcaattttactttccaactctttgtcca |
23313583 |
T |
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| Q |
116 |
agtcttttgcataaccaagtgcctcaaaataagaccacttttctggatccaatcccttaaatactccaacctcaccaccagaataatctagc |
207 |
Q |
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| T |
23313582 |
agtcttttgcataaccaagtgcctcaaaataagaccacttttctggatccaatcccttaaatactccaacctcaacaccaaaataatgtagc |
23313491 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 33135770 - 33135839
Alignment:
| Q |
16 |
acatcaagtgttagtttcttcagacacttatccaatgccatgttgcttggtttccaccatagtttgacac |
85 |
Q |
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|||||||| |||| || || ||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
33135770 |
acatcaagacttagcttttttagacactcatccaatggaatgttgcttggtttccaccatagtttgacac |
33135839 |
T |
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