View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_336 (Length: 224)

Name: NF10233A_low_336
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_336
NF10233A_low_336
[»] chr3 (26 HSPs)
chr3 (6-224)||(41985631-41985852)
chr3 (8-219)||(41980862-41981073)
chr3 (125-224)||(9494822-9494921)
chr3 (6-224)||(9448317-9448535)
chr3 (111-224)||(9343848-9343961)
chr3 (111-219)||(9329844-9329952)
chr3 (111-219)||(9336548-9336656)
chr3 (111-224)||(9407369-9407482)
chr3 (114-224)||(9655360-9655470)
chr3 (111-219)||(9695616-9695724)
chr3 (114-224)||(9425576-9425686)
chr3 (114-224)||(9646367-9646477)
chr3 (111-224)||(9617463-9617576)
chr3 (126-219)||(9340679-9340772)
chr3 (111-213)||(9416587-9416689)
chr3 (125-215)||(9352913-9353003)
chr3 (126-219)||(9347995-9348088)
chr3 (126-219)||(9369649-9369742)
chr3 (111-224)||(9397788-9397903)
chr3 (105-224)||(9756383-9756502)
chr3 (111-224)||(9432899-9433012)
chr3 (119-224)||(9626488-9626593)
chr3 (145-213)||(9441815-9441883)
chr3 (167-219)||(9614009-9614061)
chr3 (111-159)||(9686751-9686799)
chr3 (164-223)||(9377090-9377149)
[»] chr8 (2 HSPs)
chr8 (6-171)||(13170579-13170744)
chr8 (6-224)||(44688680-44688898)
[»] chr1 (8 HSPs)
chr1 (6-224)||(18991207-18991422)
chr1 (129-224)||(235216-235311)
chr1 (160-224)||(4439863-4439927)
chr1 (116-219)||(4428639-4428742)
chr1 (134-224)||(8814385-8814475)
chr1 (129-224)||(251412-251507)
chr1 (134-219)||(231589-231674)
chr1 (136-190)||(246904-246958)
[»] chr2 (1 HSPs)
chr2 (114-224)||(20694304-20694414)
[»] chr6 (7 HSPs)
chr6 (111-224)||(7041499-7041612)
chr6 (129-214)||(7046852-7046937)
chr6 (129-190)||(7025793-7025854)
chr6 (129-190)||(7029850-7029911)
chr6 (129-190)||(9170854-9170915)
chr6 (131-190)||(9159515-9159574)
chr6 (129-190)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (111-219)||(450111-450219)
chr7 (124-224)||(3695693-3695792)
[»] chr5 (1 HSPs)
chr5 (125-178)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 41985852 - 41985631
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatgg 102  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  103 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  203 ttttctgcttctgcttcggatt 224  Q
    ||||||||||||||||||||||    
T  41985652 ttttctgcttctgcttcggatt 41985631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 41981073 - 41980862
Alignment:
Q  8 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 107  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  108 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 207  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  208 tgcttctgcttc 219  Q
    ||||||||||||    
T  41980873 tgcttctgcttc 41980862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 9494822 - 9494921
Alignment:
Q  125 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 9448535 - 9448317
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    ||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| | |    
T  9448535 atggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctat 9448436  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    || | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  |||||||||    
T  9448435 aagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttt 9448336  T
Q  206 tctgcttctgcttcggatt 224  Q
    |||||||||||||||||||    
T  9448335 tctgcttctgcttcggatt 9448317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 9343961 - 9343848
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  211 ttctgcttcggatt 224  Q
    ||||||||||||||    
T  9343861 ttctgcttcggatt 9343848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 9329952 - 9329844
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  211 ttctgcttc 219  Q
    |||||||||    
T  9329852 ttctgcttc 9329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 9336656 - 9336548
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  211 ttctgcttc 219  Q
    |||||||||    
T  9336556 ttctgcttc 9336548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 9407482 - 9407369
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  211 ttctgcttcggatt 224  Q
    ||| ||||||||||    
T  9407382 ttcagcttcggatt 9407369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 9655360 - 9655470
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  214 tgcttcggatt 224  Q
     ||||||||||    
T  9655460 agcttcggatt 9655470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 9695616 - 9695724
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  211 ttctgcttc 219  Q
     ||||||||    
T  9695716 atctgcttc 9695724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 9425686 - 9425576
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  214 tgcttcggatt 224  Q
     ||||||||||    
T  9425586 agcttcggatt 9425576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 9646367 - 9646477
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  214 tgcttcggatt 224  Q
     ||||||||||    
T  9646467 agcttcggatt 9646477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 9617463 - 9617576
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  211 ttctgcttcggatt 224  Q
    ||||||||| ||||    
T  9617563 ttctgcttcagatt 9617576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  126 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 9416689 - 9416587
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  211 ttc 213  Q
    |||    
T  9416589 ttc 9416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 9353003 - 9352913
Alignment:
Q  125 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 215  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| |||||||||||||||||||||||    
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctg 9352913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9348088 - 9347995
Alignment:
Q  126 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9369742 - 9369649
Alignment:
Q  126 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9369649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 9397903 - 9397788
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 208  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  209 gcttctgcttcggatt 224  Q
    ||||| |||| |||||    
T  9397803 gcttcagctttggatt 9397788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 9756502 - 9756383
Alignment:
Q  105 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 204  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  205 ttctgcttctgcttcggatt 224  Q
     ||||| ||||| |||||||    
T  9756402 ctctgcatctgcatcggatt 9756383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 9433012 - 9432899
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  211 ttctgcttcggatt 224  Q
    ||| || |||||||    
T  9432912 ttcagcctcggatt 9432899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 9626488 - 9626593
Alignment:
Q  119 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 218  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  219 cggatt 224  Q
    ||||||    
T  9626588 cggatt 9626593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 9441815 - 9441883
Alignment:
Q  145 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| |||||||||||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 9441883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 9614009 - 9614061
Alignment:
Q  167 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    |||||||  ||||| |||||||||| ||||||||| |||||||||||||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttc 9614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 159  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 9377149 - 9377090
Alignment:
Q  164 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 223  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| ||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggat 9377090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 171  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 44688680 - 44688898
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    |  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  206 tctgcttctgcttcggatt 224  Q
    ||| || ||||||||||||    
T  44688880 tctactactgcttcggatt 44688898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 18991422 - 18991207
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    ||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  206 tctgcttctgcttcggatt 224  Q
    |||||||||||||| ||||    
T  18991225 tctgcttctgcttctgatt 18991207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 235311 - 235216
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     |||||||||||||||||||||||||||||    
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatt 235216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 4439927 - 4439863
Alignment:
Q  160 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatt 4439863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 4428742 - 4428639
Alignment:
Q  116 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 215  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  216 cttc 219  Q
    ||||    
T  4428642 cttc 4428639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 8814385 - 8814475
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatt 8814475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 251412 - 251507
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| |||||||    
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatt 251507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 246958 - 246904
Alignment:
Q  136 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttgggg 246904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 20694304 - 20694414
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  214 tgcttcggatt 224  Q
    |||||||||||    
T  20694404 tgcttcggatt 20694414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 7041612 - 7041499
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  211 ttctgcttcggatt 224  Q
    ||||||||||||||    
T  7041512 ttctgcttcggatt 7041499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 7046937 - 7046852
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttct 214  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttct 7046852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 7025854 - 7025793
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 9170915 - 9170854
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 9159515 - 9159574
Alignment:
Q  131 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 7012918 - 7012857
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  211 ttctgcttc 219  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 3695792 - 3695693
Alignment:
Q  124 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 223  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 18571213 - 18571160
Alignment:
Q  125 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt 178  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagtt 18571160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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