View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_339 (Length: 223)
Name: NF10233A_low_339
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_339 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 7589598 - 7589799
Alignment:
| Q |
18 |
agtttggagttgaatggggaagtgcccttacctcatgcgnnnnnnncttctaaatcacgactct---aagtcgcctcaaacttgcagctacggtgcagac |
114 |
Q |
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| T |
7589598 |
agttttgagttgaatggggaagtgcccttacctcatgcgtttttttcttctaaatcacgactcttctaagtcgcctcaaacttgcagctacggtgcagac |
7589697 |
T |
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| Q |
115 |
acgatttcttttactcctagaattagcctgatcgaatgttgaacgaaggagtagttgcaaatacaaaattagacaagatgaaatgttaggaatggattga |
214 |
Q |
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| T |
7589698 |
acgatttcttttactcccataattagcctgatcgaatggtgaacgaaggagtagttgcaaatacaaaattagacaagatgaaatgttaggaatggattga |
7589797 |
T |
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| Q |
215 |
tg |
216 |
Q |
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|| |
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| T |
7589798 |
tg |
7589799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 39184196 - 39184075
Alignment:
| Q |
95 |
cttgcagctacggtgcagacacgatttcttttactcctagaattagcctgatcgaatgttgaacgaaggagtagttgcaaatacaaaattagacaagatg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39184196 |
cttgcagctacggtgcagacacgatttcttttactctcagaattagcccgatcgaatggtgaacgaaggagtagttgcaattacaaaattagacaagatg |
39184097 |
T |
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| Q |
195 |
aaatgttaggaatggattgatg |
216 |
Q |
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| T |
39184096 |
aaatgttaggaatggattgatg |
39184075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 21491762 - 21491864
Alignment:
| Q |
65 |
ttctaaatcacgactctaagtcgcctcaaacttgcagctacggtgcagacacgatttcttttactcctagaattagcctgatcgaatgttgaacgaagga |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| || |||||| ||||||||||| |
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| T |
21491762 |
ttctaaatcacgactctaagccgcctcaaacttgcagctacgatgcagacacaatttcttttactcccagaattagcccgaacgaatggtgaacgaagga |
21491861 |
T |
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| Q |
165 |
gta |
167 |
Q |
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||| |
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| T |
21491862 |
gta |
21491864 |
T |
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