View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_340 (Length: 223)
Name: NF10233A_low_340
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_340 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 48993712 - 48993496
Alignment:
| Q |
1 |
aaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaagcaccacaagtcttgccacaattatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993712 |
aaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaagcaccacaagtcttgccacaattatc |
48993613 |
T |
|
| Q |
101 |
ccaattgtagttttaattccaagtgttgattcatttggttcttcagctagcataccccctagtataagcatcacacaaggcaccattgcacctgccaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993612 |
ccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccctagtataagcatcacacaaggcaccattgcacctgccaaaa |
48993513 |
T |
|
| Q |
201 |
tttccaaactatctgtc |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
48993512 |
tttccaaactatctgtc |
48993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 22624018 - 22624233
Alignment:
| Q |
1 |
aaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaagcaccacaagtcttgccacaattatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| ||||| || | |||||| ||||||| ||||||||||||| || |
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| T |
22624018 |
aaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaataccaagaacaggtagcaccaagagtcttgccacaacaata |
22624117 |
T |
|
| Q |
101 |
ccaattgtagttttaattccaagtgttgattcatttggttcttcagctagcataccccctagtataagcatcacacaaggcaccattgcacctgccaaaa |
200 |
Q |
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|
||||| |||||| ||| ||||||| | || ||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||| | |||| |
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| T |
22624118 |
ccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccctaatataagcatcacagaaggcaccattgcaccacctaaaa |
22624217 |
T |
|
| Q |
201 |
tttccaaactatctgt |
216 |
Q |
| |
|
| || ||||||||||| |
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|
| T |
22624218 |
tctctaaactatctgt |
22624233 |
T |
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