View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_341 (Length: 222)

Name: NF10233A_low_341
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_341
NF10233A_low_341
[»] chr5 (5 HSPs)
chr5 (19-159)||(32268817-32268957)
chr5 (25-183)||(41900158-41900316)
chr5 (127-199)||(32268755-32268825)
chr5 (33-108)||(41886271-41886346)
chr5 (126-175)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (115-182)||(15091347-15091414)
chr7 (117-179)||(10168806-10168868)
chr7 (117-179)||(10176331-10176393)
chr7 (54-95)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (121-182)||(2460597-2460658)
chr4 (103-176)||(2367656-2367729)
chr4 (121-170)||(2547544-2547593)
chr4 (124-176)||(2381378-2381430)
chr4 (122-182)||(6007665-6007725)
chr4 (118-176)||(566629-566687)
chr4 (123-176)||(2525763-2525816)
chr4 (125-170)||(12124836-12124881)
chr4 (125-170)||(12126892-12126937)
chr4 (117-182)||(55907434-55907499)
chr4 (124-176)||(2486313-2486365)
chr4 (124-176)||(5035628-5035680)
chr4 (136-182)||(1547469-1547515)
chr4 (118-168)||(2376228-2376278)
chr4 (124-162)||(2380123-2380161)
chr4 (121-170)||(2472104-2472153)
chr4 (115-155)||(8445271-8445311)
chr4 (135-175)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (115-182)||(513426-513493)
chr3 (117-168)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (116-176)||(14821628-14821688)
chr6 (124-176)||(6395781-6395833)
chr6 (124-172)||(6427432-6427480)
chr6 (136-170)||(6437161-6437195)
chr6 (134-176)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (117-176)||(32152212-32152271)
chr8 (124-170)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (117-182)||(1036176-1036241)
chr2 (117-170)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (127-176)||(15837967-15838016)
chr1 (117-176)||(33161439-33161498)
chr1 (124-168)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 32268957 - 32268817
Alignment:
Q  19 gatgaaaaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgct 118  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268957 gatgcaaaaagaagaagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgct 32268858  T
Q  119 tgaaatctctctccatcgtctccaaacagttactctccatc 159  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32268857 tgaaatctctctccatcgtctccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 41900158 - 41900316
Alignment:
Q  25 aaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaat 124  Q
    |||| |||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | ||||||||    
T  41900158 aaaaaaagaagaaaatcgataagttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaat 41900257  T
Q  125 ctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctt 183  Q
    |||||||  |||||||||||||||| |||||||||||||||  ||||||||| ||||||    
T  41900258 ctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  127 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 41886271 - 41886346
Alignment:
Q  33 aagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 108  Q
    ||||||| ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886271 aagaaaaacaatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  126 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 175  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  115 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 179  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 179  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  54 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 95  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  121 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  103 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  121 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 170  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  122 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  118 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  123 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  125 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 170  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  125 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 170  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  136 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  118 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 168  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcacc 162  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  121 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 170  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  115 tgcttgaaatctctctccatcgtctccaaacagttactctc 155  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  135 cgtctccaaacagttactctccatcaccaaccgtcttcgat 175  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  115 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 168  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  116 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 172  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  136 gtctccaaacagttactctccatcaccaaccgtct 170  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  134 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 170  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 182  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 170  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  127 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  117 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 176  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  124 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 168  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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