View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_343 (Length: 222)
Name: NF10233A_low_343
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_343 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] scaffold0252 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0381 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 20659257 - 20659043
Alignment:
| Q |
8 |
gccattgagttcgccgcgagactccgcgtcacgaagaagggctgatgaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcgg |
107 |
Q |
| |
|
|||||||||||| || |||||||||||||| | || ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20659257 |
gccattgagttctcctcgagactccgcgtctcaaataagtgctgataaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcgg |
20659158 |
T |
|
| Q |
108 |
aggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagtaatccacagactcaacacacatacccatcctgtggatccaacgat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20659157 |
aggccgcgtcccggaatgataggtccaacctgttcaccatttacaaggacatagtaatccacagactcaacacacatacccatccagtggatccaacgat |
20659058 |
T |
|
| Q |
208 |
catggaaacccattt |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20659057 |
catggaaacccattt |
20659043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 25102613 - 25102439
Alignment:
| Q |
48 |
gctgatgaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccat |
147 |
Q |
| |
|
|||||| |||| || |||||||||||||| |||| ||||||||||| |||||||||||||| || || || ||||| ||||| |||||||| ||||||| |
|
|
| T |
25102613 |
gctgataaaccctctgcacatataataaacaaattgggggaaagaggatccccttgtcggagaccacgccctggaataatagggccaacctgctcaccat |
25102514 |
T |
|
| Q |
148 |
tcacaaggacatagtaatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccattt |
222 |
Q |
| |
|
| ||||| || | ||||| |||||||| |||||||||| |||| || |||||||||| ||| |||||||||| |
|
|
| T |
25102513 |
taacaagcactgaataatcgacagactctacacacatacgtatccaatgaatccaacgatgatgaaaacccattt |
25102439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 44884256 - 44884112
Alignment:
| Q |
63 |
gcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagt |
162 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||| || || || || |||||||| || || |||||||||||||| || ||||| ||| | | |
|
|
| T |
44884256 |
gcacaaataataaacaaatacggggaaagaggatccccttgacgcagaccacgccccggaataatgggaccaacctgttcaccgttaacaagcacagaat |
44884157 |
T |
|
| Q |
163 |
aatccacagactcaacacacatacccatcctgtggatccaacgat |
207 |
Q |
| |
|
|||| |||||||| |||||||||| ||||| || |||||||||| |
|
|
| T |
44884156 |
aatcgacagactcgacacacatactcatccaatgaatccaacgat |
44884112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 5603261 - 5603334
Alignment:
| Q |
57 |
ccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgatagg |
130 |
Q |
| |
|
||||| ||||| |||||||| | ||| ||||| |||||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
5603261 |
ccttctgcacacataataaacagataaggggagagagggtccccttgtctcagtcctcgtcccggaataatagg |
5603334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 45011850 - 45011730
Alignment:
| Q |
64 |
cacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagta |
163 |
Q |
| |
|
|||| |||||||| | ||||| |||||||| |||| ||| || ||||| | ||| || || ||||| ||||||| |||| ||| ||||| ||| | || |
|
|
| T |
45011850 |
cacagataataaaaaggtacggagaaagaggatcccattgacgaaggccacatcctgggataatagggccaaccttttcattattgacaagaacagaata |
45011751 |
T |
|
| Q |
164 |
atccacagactcaacacacat |
184 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
45011750 |
atccacagactcgacacacat |
45011730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 3207166 - 3207317
Alignment:
| Q |
55 |
aaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaag |
154 |
Q |
| |
|
||||||| ||||| |||||||| || || || ||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| | |||||| ||||| |
|
|
| T |
3207166 |
aaccttctgcacaaataataaacaagtatggagaaagagggtccccttgtcggagaccgcggccgggaattataggaccaacctggttaccattaacaag |
3207265 |
T |
|
| Q |
155 |
gacatagtaatccacagactcaacacacatacccatcctgtggatccaacga |
206 |
Q |
| |
|
||||| ||||| || || | ||||||||||| ||||| ||| ||||||||| |
|
|
| T |
3207266 |
cacataataatctactgattgaacacacatacacatccagtgaatccaacga |
3207317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 8120978 - 8121137
Alignment:
| Q |
63 |
gcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagt |
162 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||| ||||||||||||| ||||| || ||||| ||||| |||||||| ||||| || ||||| ||| || |
|
|
| T |
8120978 |
gcacagataataaacagatagggggaaagaggacccccttgtcggagaccgcgccctggaataataggaccaacctgctcaccgttaacaagcacagtgt |
8121077 |
T |
|
| Q |
163 |
aatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccattt |
222 |
Q |
| |
|
|||| || ||||| ||||| |||| ||||| || ||||| |||| ||| |||||||||| |
|
|
| T |
8121078 |
aatcgactgactctacacatatacgcatccaatgaatccagcgattatgaaaacccattt |
8121137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 17244641 - 17244769
Alignment:
| Q |
64 |
cacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagta |
163 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||| || || || || || |||| || || |||||||||||||| || ||||| ||| | || |
|
|
| T |
17244641 |
cacaaataataaacaaatacggggaaagaggatccccttgacgcagaccacgccctagaataatgggaccaacctgttcaccgttaacaagcacagaata |
17244740 |
T |
|
| Q |
164 |
atccacagactcaacacacatacccatcc |
192 |
Q |
| |
|
||| |||||||| |||||||||| ||||| |
|
|
| T |
17244741 |
atcgacagactcgacacacatactcatcc |
17244769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 8864414 - 8864536
Alignment:
| Q |
80 |
atacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagtaatccacagactcaaca |
179 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| || || ||||| |||||||| |||| |||| |||||||| ||| | |||| ||| ||||| ||| |
|
|
| T |
8864414 |
atacggggaaagtggatccccttgtctaaggccacgccctggaataataggtcccaccttttcattgttcacaagaacagaataattcactgactctaca |
8864513 |
T |
|
| Q |
180 |
cacatacccatcctgtggatcca |
202 |
Q |
| |
|
||||||| ||||| ||| ||||| |
|
|
| T |
8864514 |
cacatacacatccagtgaatcca |
8864536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 41599010 - 41598880
Alignment:
| Q |
63 |
gcacatataataaataaatacgggg-aaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatag |
161 |
Q |
| |
|
||||| |||||||| ||||| |||| ||||||| |||||||||||||| || || || || || ||||| ||||||| |||||||| ||||| || | |
|
|
| T |
41599010 |
gcacaaataataaacaaatagggggcaaagaggatccccttgtcggagaccacgccctgggataatagggtcaacctgctcaccattaacaagtgcagtg |
41598911 |
T |
|
| Q |
162 |
taatccacagactcaacacacatacccatcc |
192 |
Q |
| |
|
||| | || ||||| |||||||||| ||||| |
|
|
| T |
41598910 |
taaacaactgactctacacacatacgcatcc |
41598880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 29338049 - 29338199
Alignment:
| Q |
57 |
ccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaagga |
156 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||| |||||||| || || || || |||||||| || || ||||| |||||||| || ||||| | |
|
|
| T |
29338049 |
ccttcagcacaaataataaacaaatacggggaaagaggatccccttgacgcagaccacgccccggaataatgggaccaacatgttcaccgttaacaagca |
29338148 |
T |
|
| Q |
157 |
catagtaatccacagactcaacacacatacccatcctgtggatccaacgat |
207 |
Q |
| |
|
|| | ||||| |||||||| |||||||||| ||||| || |||||||||| |
|
|
| T |
29338149 |
caaaataatcgacagactcgacacacatactcatccaatgaatccaacgat |
29338199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 5881 - 5722
Alignment:
| Q |
63 |
gcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagt |
162 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||||||||| || | || ||||| ||||| |||||||| |||||||| ||||| ||| || |
|
|
| T |
5881 |
gcacatataataaacaaatagggggaaagaggatccccttgtcggagaccacaccctggaataatagggccaacctgctcaccattgacaagcacagtgt |
5782 |
T |
|
| Q |
163 |
aatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccattt |
222 |
Q |
| |
|
|||| | ||||| |||||||||| ||||| || ||||| || | ||| |||||||||| |
|
|
| T |
5781 |
aatcgtctgactctacacacatacgcatccaatgaatccagcggttatgaaaacccattt |
5722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 41338822 - 41338656
Alignment:
| Q |
56 |
accttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaagg |
155 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||| ||||||||||| | ||||| |||| |||||| | ||||||| ||||| ||| ||||| |
|
|
| T |
41338822 |
accttcggcacaaataataaacaaatatggggaaagaggatccccttgtcgaatgccgcaccccgagatgatatggccaaccttttcactattgacaaga |
41338723 |
T |
|
| Q |
156 |
acatagtaatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccattt |
222 |
Q |
| |
|
|| | |||||||| ||||| |||||||||| ||||| || |||||| || ||| ||| ||||||| |
|
|
| T |
41338722 |
actgaataatccactgactctacacacatactcatccaatgaatccaaagagcattgaaccccattt |
41338656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 21715933 - 21716010
Alignment:
| Q |
63 |
gcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgt |
140 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||||||||| || | || ||||| ||||| ||||||||| |
|
|
| T |
21715933 |
gcacatataataaacaaatagggggaaagaggatccccttgtcggagaccaagccctggaataatagggccaacctgt |
21716010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 20928054 - 20927918
Alignment:
| Q |
56 |
accttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaagg |
155 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||| ||||||||||| | ||||| |||| |||||| | ||||||| ||||| ||| ||||| |
|
|
| T |
20928054 |
accttcggcacaaataataaacaaatatggggaaagaggatccccttgtcgaatgccgcaccccgagatgatatggccaaccttttcactattgacaaga |
20927955 |
T |
|
| Q |
156 |
acatagtaatccacagactcaacacacatacccatcc |
192 |
Q |
| |
|
|| | |||||||| ||||| |||||||||| ||||| |
|
|
| T |
20927954 |
actgaataatccactgactctacacacatactcatcc |
20927918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 26905499 - 26905371
Alignment:
| Q |
57 |
ccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaagga |
156 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||||| || |||||||| || || || | ||||| || ||||| |||||| |||||||||||||||| | |
|
|
| T |
26905499 |
ccttcagcacatataataaacaagtacggagaaagtggatccccttgacgaagaccacaccccgggataatagggccaacccgttcaccattcacaagta |
26905400 |
T |
|
| Q |
157 |
catagtaatccacagactcaacacacata |
185 |
Q |
| |
|
|| |||||||||| || |||||||||||| |
|
|
| T |
26905399 |
cagagtaatccaccgattcaacacacata |
26905371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 9957187 - 9957096
Alignment:
| Q |
63 |
gcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaag |
154 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||||||||| || || || ||||| ||||| ||||||| |||||||| ||||| |
|
|
| T |
9957187 |
gcacatataataaacaaatagggggaaagaggatccccttgtcggagaccacgccctggaataatagggccaacctactcaccattaacaag |
9957096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 17754433 - 17754583
Alignment:
| Q |
29 |
ctccgcgtcacgaagaagggctgatgaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgata |
128 |
Q |
| |
|
|||||| ||||||| ||||| ||| | ||||| ||||| || ||||||| |||||| || | ||| || ||||| || || || || |||||||| ||| |
|
|
| T |
17754433 |
ctccgcatcacgaataagggatgacaagccttcagcacaaatgataaatagatacggcgacaaaggatctccttgccgaagccctcgacccggaataata |
17754532 |
T |
|
| Q |
129 |
ggtccaacctgttcaccattcacaaggacatagtaatccacagactcaaca |
179 |
Q |
| |
|
||||||||| ||||||||| || | ||| |||| |||||||| |||||| |
|
|
| T |
17754533 |
ggtccaaccgtttcaccattaaccaaaacaaagtagtccacagattcaaca |
17754583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 16746758 - 16746889
Alignment:
| Q |
55 |
aaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccgga-atgataggtccaacctgttcaccattcacaa |
153 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| |||||||| |||||||| || ||||| | ||||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
16746758 |
aaccttcagcacagataataaacaaatacgaagaaagaggatccccttggcgaaggccacaccccggngataataggaccaacctgttcaccattaacaa |
16746857 |
T |
|
| Q |
154 |
ggacatagtaatccacagactcaacacacata |
185 |
Q |
| |
|
| ||| |||||||||| || |||||||||||| |
|
|
| T |
16746858 |
gtacagagtaatccaccgattcaacacacata |
16746889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 31663086 - 31663258
Alignment:
| Q |
48 |
gctgatgaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccat |
147 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||| ||||||||||| |||||| || |||| || || || ||||| ||||| | |||||| ||||||| |
|
|
| T |
31663086 |
gctgataaaccctctgcacatataataaacaaatagggggaaagaggatcccctagtaggagaccacgccctggaataatagggcgaacctgctcaccat |
31663185 |
T |
|
| Q |
148 |
tcacaaggacatagtaatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccat |
220 |
Q |
| |
|
| ||||| || | ||||| || ||||| |||||||||| |||| ||| |||||||||| ||| || ||||| |
|
|
| T |
31663186 |
taacaagcactgaataatcgacggactctacacacatacgtatccagtgaatccaacgatgatgaaagcccat |
31663258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 31933310 - 31933138
Alignment:
| Q |
48 |
gctgatgaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccat |
147 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||| ||||||||||| |||||| || |||| || || || ||||| ||||| | |||||| ||||||| |
|
|
| T |
31933310 |
gctgataaaccctctgcacatataataaacaaatagggggaaagaggatcccctagtaggagaccacgccctggaataatagggctaacctgctcaccat |
31933211 |
T |
|
| Q |
148 |
tcacaaggacatagtaatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccat |
220 |
Q |
| |
|
| ||||| || | ||||| || ||||| |||||||||| |||| ||| |||||||||| ||| || ||||| |
|
|
| T |
31933210 |
taacaagcactgaataatcgacggactctacacacatacgtatccagtgaatccaacgatgatgaaagcccat |
31933138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 31952628 - 31952471
Alignment:
| Q |
63 |
gcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagt |
162 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||| |||||||||||||| || || || ||||| ||||| |||||||| || ||||| ||||| || | | |
|
|
| T |
31952628 |
gcacatataataaacaaatggggggaaaaaggatccccttgtcggagaccacgccctggaataatagggccaacctgctcgccattaacaagcactgaat |
31952529 |
T |
|
| Q |
163 |
aatccacagactcaacacacatacccatcctgtggatccaacgatcatggaaacccat |
220 |
Q |
| |
|
|||| || ||||| |||||||||| |||| ||| |||||||||| ||| || ||||| |
|
|
| T |
31952528 |
aatcgacggactctacacacatacgtatccagtgaatccaacgatgatgaaagcccat |
31952471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 12528785 - 12528912
Alignment:
| Q |
57 |
ccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaagga |
156 |
Q |
| |
|
||||| ||||| |||||||| | |||| ||||||||||| ||||||||| | ||| || |||||||| | ||||||||| ||||| ||||||||||| | |
|
|
| T |
12528785 |
ccttccgcacaaataataaaaagatactgggaaagaggggccccttgtcacaagccacgccccggaataacaggtccaacatgttccccattcacaagaa |
12528884 |
T |
|
| Q |
157 |
catagtaatccacagactcaacacacat |
184 |
Q |
| |
|
| | ||||| | |||||| |||||||| |
|
|
| T |
12528885 |
cgttataatcaatagactcgacacacat |
12528912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 36788599 - 36788502
Alignment:
| Q |
95 |
gtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagtaatccacagactcaacacacatacccatcc |
192 |
Q |
| |
|
|||||||||||| || || | |||||||| || || ||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||||| ||||| |
|
|
| T |
36788599 |
gtccccttgtcgaagcccacaccccggaataatgggaccaacctgttcaccattaacaagcacagagtaatcaacagactcaacgtacatactcatcc |
36788502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 7881 - 7775
Alignment:
| Q |
78 |
aaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagtaatccacagactcaa |
177 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||| || |||||||| | ||||||||| ||||| ||||||||||| ||| ||||| ||||||| | |
|
|
| T |
7881 |
aaatatggggaaagagggtccccttgtcgcaagccacgccccggaataacaggtccaacatgttccccattcacaagaacactataatcaacagactgga |
7782 |
T |
|
| Q |
178 |
cacacat |
184 |
Q |
| |
|
||||||| |
|
|
| T |
7781 |
cacacat |
7775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 188648 - 188786
Alignment:
| Q |
69 |
ataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagtaatcca |
168 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||| || || || || |||||||| || || |||||||||||||| || ||||| ||| | ||||| | |
|
|
| T |
188648 |
ataataaacaaatacgaagaaagaggatccccttgacgcagaccacgccccggaataatgggaccaacctgttcaccgttaacaagcacagaataatcga |
188747 |
T |
|
| Q |
169 |
cagactcaacacacatacccatcctgtggatccaacgat |
207 |
Q |
| |
|
||||||| | |||||||| ||||| || |||||||||| |
|
|
| T |
188748 |
cagactcgatacacatactcatccaatgaatccaacgat |
188786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 27011904 - 27012010
Alignment:
| Q |
78 |
aaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgataggtccaacctgttcaccattcacaaggacatagtaatccacagactcaa |
177 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||| || |||||||| | ||||||||| ||||| ||||||||||| ||| ||||| ||||||| | |
|
|
| T |
27011904 |
aaatatggggaaagagggtccccttgtcgcaagccacgccccggaataacaggtccaacatgttccccattcacaagaacactataatcaacagactgga |
27012003 |
T |
|
| Q |
178 |
cacacat |
184 |
Q |
| |
|
||||||| |
|
|
| T |
27012004 |
cacacat |
27012010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 28858749 - 28858597
Alignment:
| Q |
29 |
ctccgcgtcacgaagaagggctgatgaaccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgata |
128 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||| ||||| || ||||||| |||| | || | ||| |||||||| || || || || |||| ||| ||| |
|
|
| T |
28858749 |
ctccgcgtcacgaataagggatgacaagccttcagcacaaatgataaatagatacagcgacaaaggatccccttgccgaagccctcgacccgaaataata |
28858650 |
T |
|
| Q |
129 |
ggtccaacctgttcaccattcacaaggacatagtaatccacagactcaacaca |
181 |
Q |
| |
|
||||||||| ||||||||| || | ||| |||| |||||||| |||||||| |
|
|
| T |
28858649 |
ggtccaaccgtttcaccattaaccaaaacagagtagtccacagattcaacaca |
28858597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 8528290 - 8528217
Alignment:
| Q |
57 |
ccttcggcacatataataaataaatacggggaaagagggtccccttgtcggaggccgcgtcccggaatgatagg |
130 |
Q |
| |
|
||||| ||||| |||||||| | ||| ||||| |||||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
8528290 |
ccttctgcacacataataaacagataaggggagagagggtccccttgtctcagtcctcgtcccggaataatagg |
8528217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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