View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_346 (Length: 221)

Name: NF10233A_low_346
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_346
NF10233A_low_346
[»] chr4 (10 HSPs)
chr4 (2-211)||(37856981-37857190)
chr4 (90-208)||(23059355-23059473)
chr4 (89-182)||(35096886-35096979)
chr4 (110-181)||(16889141-16889212)
chr4 (10-85)||(16889003-16889078)
chr4 (87-150)||(17283593-17283656)
chr4 (10-85)||(23059516-23059591)
chr4 (111-182)||(6969609-6969680)
chr4 (111-150)||(9633058-9633097)
chr4 (111-179)||(1479274-1479342)
[»] chr1 (11 HSPs)
chr1 (83-180)||(17321847-17321944)
chr1 (88-181)||(27877678-27877771)
chr1 (92-211)||(12539097-12539216)
chr1 (88-180)||(10395400-10395492)
chr1 (87-178)||(3601265-3601356)
chr1 (10-85)||(10395533-10395608)
chr1 (88-146)||(2114333-2114391)
chr1 (114-207)||(40609930-40610023)
chr1 (10-85)||(17321736-17321811)
chr1 (116-150)||(20639595-20639629)
chr1 (90-182)||(32544381-32544473)
[»] chr3 (11 HSPs)
chr3 (110-208)||(1017640-1017738)
chr3 (90-181)||(26730912-26731003)
chr3 (89-181)||(47703776-47703868)
chr3 (104-181)||(10346524-10346601)
chr3 (83-160)||(4525493-4525570)
chr3 (10-86)||(10346657-10346733)
chr3 (10-85)||(47703910-47703985)
chr3 (10-48)||(1017838-1017876)
chr3 (116-180)||(20916414-20916478)
chr3 (116-180)||(20925376-20925440)
chr3 (17-85)||(26731046-26731114)
[»] chr2 (7 HSPs)
chr2 (88-181)||(28589993-28590086)
chr2 (90-181)||(41315906-41315997)
chr2 (88-211)||(10977734-10977857)
chr2 (10-85)||(10977618-10977693)
chr2 (10-85)||(28590127-28590202)
chr2 (10-85)||(41316040-41316115)
chr2 (111-150)||(6860502-6860541)
[»] chr6 (5 HSPs)
chr6 (88-211)||(13104380-13104504)
chr6 (83-168)||(27862134-27862219)
chr6 (110-178)||(11657633-11657701)
chr6 (88-180)||(32899880-32899972)
chr6 (10-85)||(27862247-27862322)
[»] chr8 (7 HSPs)
chr8 (88-181)||(26951481-26951574)
chr8 (88-168)||(21276442-21276522)
chr8 (10-85)||(33324570-33324645)
chr8 (10-87)||(26951613-26951690)
chr8 (9-85)||(21276563-21276639)
chr8 (10-85)||(23556595-23556670)
chr8 (88-205)||(33324686-33324800)
[»] chr7 (6 HSPs)
chr7 (88-181)||(17852321-17852414)
chr7 (110-211)||(9451459-9451560)
chr7 (88-181)||(12129468-12129561)
chr7 (10-85)||(9451321-9451396)
chr7 (111-150)||(12980730-12980769)
chr7 (111-181)||(20492480-20492550)
[»] chr5 (7 HSPs)
chr5 (88-181)||(30304798-30304891)
chr5 (88-180)||(24870407-24870499)
chr5 (88-181)||(8703535-8703628)
chr5 (88-181)||(24275219-24275312)
chr5 (88-181)||(24386901-24386994)
chr5 (10-85)||(24275103-24275178)
chr5 (10-85)||(24387035-24387110)
[»] scaffold0010 (2 HSPs)
scaffold0010 (88-210)||(255378-255500)
scaffold0010 (10-48)||(255577-255615)
[»] scaffold0151 (1 HSPs)
scaffold0151 (87-180)||(21393-21485)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 37857190 - 37856981
Alignment:
Q  2 catcatttgattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaattattgcttgtaaacagc 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||| |    
T  37857190 catcattggattggatctctaatcaacaatttgataatgttgattttatacttgattgtaaaatatttgttgattgtgtcaattattgcttgtaaacaac 37857091  T
Q  102 tattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtcttgtctaatcccaa 201  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||| || ||||||||||    
T  37857090 tgctagaggatagatttcagaactctcatgttgagttcaacaggaggcaagcaaatagagtagctcacgagttagctcaggcggtcctgcctaatcccaa 37856991  T
Q  202 cccccatatt 211  Q
    ||||||||||    
T  37856990 cccccatatt 37856981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 23059473 - 23059355
Alignment:
Q  90 cttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtctt 189  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||  |||| |    
T  23059473 cttgtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagtcct 23059374  T
Q  190 gtctaatcccaacccccat 208  Q
     |||||||| | |||||||    
T  23059373 atctaatcctagcccccat 23059355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 35096886 - 35096979
Alignment:
Q  89 gcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcaga 182  Q
    |||||||||||  | |||| |||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||||||||||||||    
T  35096886 gcttgtaaacaaatgttagtggatagatttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagctcaga 35096979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 16889141 - 16889212
Alignment:
Q  110 gatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||||||||||||||||||||   ||||||| |||||||| |||||||||||||||||||||    
T  16889141 gatagatttcagaactctcatgttgagttcagtcggaggcaagcaaatagggtagctcacgagttagctcag 16889212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 16889003 - 16889078
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||||||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  16889003 gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 16889078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 17283656 - 17283593
Alignment:
Q  87 ttgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggca 150  Q
    ||||||||||||| |||||||   ||||||||||||||||| |||| |||||||| ||||||||    
T  17283656 ttgcttgtaaacaactattagtcaatagatttcagaactcttatgtcgagttcaataggaggca 17283593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 23059591 - 23059516
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||||||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  23059591 gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 23059516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 6969609 - 6969680
Alignment:
Q  111 atagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcaga 182  Q
    |||||||||||||||||||||| || ||||| | |||| | | |||| | || |||||||||||||||||||    
T  6969609 atagatttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagttagctcaga 6969680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 9633058 - 9633097
Alignment:
Q  111 atagatttcagaactctcatgttgagttcaacaggaggca 150  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  9633058 atagatttcagaactctcatgtcgagttcaataggaggca 9633097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 1479342 - 1479274
Alignment:
Q  111 atagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctc 179  Q
    |||||||||||||||||||| | |||||||| |||||||| | |||| | ||  ||||| |||||||||    
T  1479342 atagatttcagaactctcatatcgagttcaataggaggcaagtaaatggggtcactcacaagttagctc 1479274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 17321847 - 17321944
Alignment:
Q  83 attattgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    |||| ||||||||||||| | |||  |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  17321847 attagtgcttgtaaacagttgttattggatagatttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagctca 17321944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 27877678 - 27877771
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||||  |||  ||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  27877678 tgcttgtaaacagctgctagtagatagatttcataactctcatgttgagttcagcaggaggcaagcaaatagggtagctcacgagttagctcag 27877771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 12539097 - 12539216
Alignment:
Q  92 tgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtcttgt 191  Q
    |||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||| |   || | |||    
T  12539097 tgtaaacaactgttagtggatagatttcagaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagctgatgcagccatgt 12539196  T
Q  192 ctaatcccaacccccatatt 211  Q
    ||||||| | ||||||||||    
T  12539197 ctaatcctagcccccatatt 12539216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 10395492 - 10395400
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    |||||||||||||||  |||  |||| ||| ||||||||| ||||| |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10395492 tgcttgtaaacagctgctagttgataaattccagaactcttatgttaagttcagcaggaggcaagcaaatagggtagctcacgagttagctca 10395400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 3601356 - 3601265
Alignment:
Q  87 ttgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagct 178  Q
    |||||||||||||  ||||||   |||||||||||||||||||||| |||||||| |||||||| || |||   || |||||||||||||||    
T  3601356 ttgcttgtaaacaattattagttaatagatttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct 3601265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 10395608 - 10395533
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||| ||||||||||| |||||| |   ||| ||||||||  ||||||||||||||||||    
T  10395608 gattggctctctaatcaacagtttgataatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaatt 10395533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 2114333 - 2114391
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacagga 146  Q
    ||||||||||||  ||||||   |||||||||||||||||||||| |||||||||||||    
T  2114333 tgcttgtaaacacttattagttaatagatttcagaactctcatgtcgagttcaacagga 2114391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 40609930 - 40610023
Alignment:
Q  114 gatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtcttgtctaatcccaaccccca 207  Q
    ||||||||||||||||||||||||||| ||| ||  | | |||||| |||||| ||||||||  ||||  || | |||||||||| ||||||||    
T  40609930 gatttcagaactctcatgttgagttcatcagaagataagtaaatagggtagcttacgagttaattcaggcagccctgtctaatcctaaccccca 40610023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 17321736 - 17321811
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||||||||||||||||| ||||| ||||| ||||||  |  ||| || |||| | ||||||||||||||||||    
T  17321736 gattggatctctaatcaacagtttgacaatgtcgattttgcacttgattgcaaaaaagttgttgattgtgtcaatt 17321811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 20639595 - 20639629
Alignment:
Q  116 tttcagaactctcatgttgagttcaacaggaggca 150  Q
    |||||||||||||||||||||||||| ||||||||    
T  20639595 tttcagaactctcatgttgagttcaataggaggca 20639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 32544473 - 32544381
Alignment:
Q  90 cttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcaga 182  Q
    ||||||||||| ||||||   |||||| |||||||| |||||| ||||| ||||| ||||| || |||   || | |||||||||||||||||    
T  32544473 cttgtaaacagttattagttaatagatatcagaactttcatgtcgagtttaacagaaggcaagcgaatgaggtcgttcacgagttagctcaga 32544381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 1017738 - 1017640
Alignment:
Q  110 gatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtcttgtctaatcccaacccccat 208  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| || | | |||||||| | |||||||    
T  1017738 gatagatttcagaactctcatgttgagttcaaccggaggcaagcaaatagggtagctcacgagttagctcagacagccctatctaatcctagcccccat 1017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 26731003 - 26730912
Alignment:
Q  90 cttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||| |||||||||||||||    
T  26731003 cttgtaaacagctactagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagcacacgagttagctcag 26730912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 47703868 - 47703776
Alignment:
Q  89 gcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    ||||||||||||||  |||  |||||||||||||||||||||||||||||   | ||||||| |||||||| |||||||||||||||||||||    
T  47703868 gcttgtaaacagctgctagttgatagatttcagaactctcatgttgagttatgccggaggcaagcaaatagggtagctcacgagttagctcag 47703776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 10346601 - 10346524
Alignment:
Q  104 ttagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||||||||    
T  10346601 ttagtggatagatttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagctcag 10346524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 4525570 - 4525493
Alignment:
Q  83 attattgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaataga 160  Q
    |||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||| || |||||| |||| ||||    
T  4525570 attattgcttgtaaacagctgttagtagataaatttcagaactctcatgttgagttcagcaagaggcaagcaagtaga 4525493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 10346733 - 10346657
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatta 86  Q
    ||||||||||||||||||||||||||||||||  | |||  |  ||| ||||||||| |||||||||||||||||||    
T  10346733 gattggatctctaatcaacaatttgataatgtgaactttgcacttgactgtaaaagagttgttgattgtgtcaatta 10346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 47703985 - 47703910
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||||||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  47703985 gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 47703910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 1017876 - 1017838
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgatttt 48  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  1017876 gattggctctctaatcaacaatttgataatgtagatttt 1017838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 20916414 - 20916478
Alignment:
Q  116 tttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    |||||||||||| ||||||||||||| |||||||| || |||   || |||| ||||||||||||    
T  20916414 tttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagctca 20916478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 20925376 - 20925440
Alignment:
Q  116 tttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    |||||||||||| ||||||||||||| |||||||| || |||   || |||| ||||||||||||    
T  20925376 tttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagctca 20925440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 26731114 - 26731046
Alignment:
Q  17 tctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    ||||||||||||| ||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  26731114 tctctaatcaacagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 26731046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 28590086 - 28589993
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||||  |||  ||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||    
T  28590086 tgcttgtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcag 28589993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 41315997 - 41315906
Alignment:
Q  90 cttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||| |||||    
T  41315997 cttgtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcag 41315906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 10977734 - 10977857
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtc 187  Q
    |||||||||||| ||  ||||| ||||||| ||||||||||||||||||||||||| |||||| | |||||| ||||| || ||| ||||||||  || |    
T  10977734 tgcttgtaaacaactgctagagaatagattccagaactctcatgttgagttcaacatgaggcaagtaaatagggtagcccatgagctagctcaggtagcc 10977833  T
Q  188 ttgtctaatcccaacccccatatt 211  Q
     |||||||||| | ||||||||||    
T  10977834 ctgtctaatcctagcccccatatt 10977857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 10977618 - 10977693
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||||||||||||||||||||||||||||| |||||| ||  ||| ||||||| | ||||||||||||||||||    
T  10977618 gattggatctctaatcaacaatttgataatgtcgattttgtacttgattgtaaaataattgttgattgtgtcaatt 10977693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 28590202 - 28590127
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||||||||||||||| |||||| |   ||| ||||||| | ||||||||||||||||||    
T  28590202 gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaagttgttgattgtgtcaatt 28590127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 41316115 - 41316040
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||||||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  41316115 gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 41316040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 6860502 - 6860541
Alignment:
Q  111 atagatttcagaactctcatgttgagttcaacaggaggca 150  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  6860502 atagatttcaaaactctcatgtcgagttcaacaggaggca 6860541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 13104504 - 13104380
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggc-aggcaaatagagtagctcacgagttagctcagaaagt 186  Q
    |||||||||||||||  |||  |||||||||||||||||||||||||||||||||| ||||| | |||| ||| |||||||||||||||||||||| ||     
T  13104504 tgcttgtaaacagctggtagtagatagatttcagaactctcatgttgagttcaacaagaggcaaagcaagtagggtagctcacgagttagctcagacagc 13104405  T
Q  187 cttgtctaatcccaacccccatatt 211  Q
    | |||||||||  | ||||||||||    
T  13104404 cctgtctaatcttagcccccatatt 13104380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 27862219 - 27862134
Alignment:
Q  83 attattgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctca 168  Q
    |||| |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||    
T  27862219 attactgcttgtaaatagctgctagaggatagatttcagaactctcatgttgagttcaacaggaggcaaataaatagggtagctca 27862134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 11657633 - 11657701
Alignment:
Q  110 gatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagct 178  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||||||    
T  11657633 gatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagct 11657701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 32899880 - 32899972
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    ||||||||||||| |  |||  ||||||||||||||||||||||||||||||| |||||| ||  ||||||| |||| |||||||||||||||    
T  32899880 tgcttgtaaacagttgctagtagatagatttcagaactctcatgttgagttcaccaggagacaatcaaatagggtagttcacgagttagctca 32899972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 27862322 - 27862247
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||||||||||||||||||||||||||| |  ||||| ||  ||| ||| ||||| ||||||||||||||||||    
T  27862322 gattggatctctaatcaacaatttgataatatcaattttgtacttgattgtcaaagagttgttgattgtgtcaatt 27862247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 26951574 - 26951481
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||| ||  |||  ||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||    
T  26951574 tgcttgtaaacaactgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcag 26951481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 21276522 - 21276442
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctca 168  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||||||||||||| || |||||| ||||||||  |||||||    
T  21276522 tgcttgtaaacagctgttagtagatagatttcaaaactctcatgttgagttcagcaagaggcaagcaaataggatagctca 21276442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 33324570 - 33324645
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||||||||||||||||||||||||||||| |||||| ||  ||| ||||||| | ||||| ||||||||||||    
T  33324570 gattggatctctaatcaacaatttgataatgtcgattttgtacttgattgtaaaaaagttgttaattgtgtcaatt 33324645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 26951690 - 26951613
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaattat 87  Q
    |||||| ||||||||||||||||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||||    
T  26951690 gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattat 26951613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 21276639 - 21276563
Alignment:
Q  9 tgattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    ||||||| ||||||||||||| ||||||||||| |||||| |   ||| ||||||||  ||||||||||||||||||    
T  21276639 tgattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaatt 21276563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 23556595 - 23556670
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    ||||||| ||||| |||| | ||||| ||||| |||||| ||| ||| ||||||||| ||||||||||||||||||    
T  23556595 gattggacctctattcaatagtttgacaatgtcgattttgtatttgattgtaaaagagttgttgattgtgtcaatt 23556670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 33324686 - 33324800
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtc 187  Q
    ||||||||||||| |   |||||||||||| || |||||| ||  |||||||||||||||||| |||||||| ||||| |||||  ||| ||||  || |    
T  33324686 tgcttgtaaacagttgcaagaggatagattccaaaactcttat--tgagttcaacaggaggcacgcaaatag-gtagcccacgaactagttcaggtagcc 33324782  T
Q  188 ttgtctaatcccaacccc 205  Q
     |||||||||| ||||||    
T  33324783 ctgtctaatcctaacccc 33324800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 17852321 - 17852414
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||||  |||  |||||||||||||| |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||    
T  17852321 tgcttgtaaacagctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcag 17852414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 9451459 - 9451560
Alignment:
Q  110 gatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtcttgtctaatcccaacccccata 209  Q
    ||||||||||||||||||||| | |||||||||||||| ||  ||||||| |||||||||||||||  ||||  || | |||||||||| | ||||||||    
T  9451459 gatagatttcagaactctcatatcgagttcaacaggagacaaacaaatagggtagctcacgagttaaatcaggcagccctgtctaatcctagcccccata 9451558  T
Q  210 tt 211  Q
    ||    
T  9451559 tt 9451560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 12129468 - 12129561
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||| ||  |||  ||||||||||| |||| ||| |||||||||| | | ||||| |||||||| |||||||||||||||||||||    
T  12129468 tgcttgtaaacaactgctagttgatagatttcaaaactttcacgttgagttcagccgaaggcaagcaaatagggtagctcacgagttagctcag 12129561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 9451321 - 9451396
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||||||||||||||||  ||||| ||||| |||||| |   ||| ||||||||| ||||||||||||||||||    
T  9451321 gattggatctctaatcaaccgtttgacaatgtcgattttgttcttgattgtaaaagagttgttgattgtgtcaatt 9451396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 12980730 - 12980769
Alignment:
Q  111 atagatttcagaactctcatgttgagttcaacaggaggca 150  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  12980730 atagatttcagaactctcatgtcgagttcaacaggaggca 12980769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 20492480 - 20492550
Alignment:
Q  111 atagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||| ||||||||||| | ||||| || |||||||| || ||||| || |||||||| |||||||||    
T  20492480 atagattttagaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagctcag 20492550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 30304798 - 30304891
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||||||  |||  ||||| ||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||    
T  30304798 tgcttgtaaacagctgctagttgatagttttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcag 30304891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 24870407 - 24870499
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    |||||||||||||||  |||  |||||||||||||||||||| |||||||||||||| |||||  |||||||  |||| ||||||||||||||    
T  24870407 tgcttgtaaacagctgctagtagatagatttcagaactctcaagttgagttcaacagaaggcaaacaaataggatagcacacgagttagctca 24870499  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 8703628 - 8703535
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    ||||||||||||| |  ||| | ||||||||| |||||||||||||| |||||||| |||||| || ||||| |||||| ||| ||||| ||||    
T  8703628 tgcttgtaaacagttgatagtgaatagatttcggaactctcatgttgtgttcaacacgaggcaagcgaatagggtagcttacgggttagatcag 8703535  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 24275219 - 24275312
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||| ||  |||  |||| |||||||||| |||||||||||||||   | ||||| |||||||  |||||||||||||||||||||    
T  24275219 tgcttgtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacgagttagctcag 24275312  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 24386994 - 24386901
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcag 181  Q
    |||||||||||| ||  |||  |||| |||||||||| |||||||||||||||   | ||||| |||||||  |||||||||||||||||||||    
T  24386994 tgcttgtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacgagttagctcag 24386901  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 24275103 - 24275178
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||| ||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  24275103 gattggctctctaatcaacagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 24275178  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 24387110 - 24387035
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgattttatatctgaatgtaaaagatttgttgattgtgtcaatt 85  Q
    |||||| ||||||||||||| ||||||||||| |||||| |   ||| |||||||   ||||||||||||||||||    
T  24387110 gattggctctctaatcaacagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaatt 24387035  T

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Target: scaffold0010 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 255500 - 255378
Alignment:
Q  88 tgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctcagaaagtc 187  Q
    |||||||||||||||  |||  |||||||||||||| |||||||||||||||| | ||||||| |||||||| |||||||||| ||||||||||  || |    
T  255500 tgcttgtaaacagctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggtagctcacgggttagctcaggcagcc 255401  T
Q  188 ttgtctaatcccaacccccatat 210  Q
     | |||||||| | |||||||||    
T  255400 ctatctaatcctagcccccatat 255378  T

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Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 255615 - 255577
Alignment:
Q  10 gattggatctctaatcaacaatttgataatgttgatttt 48  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  255615 gattggctctctaatcaacaatttgataatgtagatttt 255577  T

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Target: scaffold0151 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 21485 - 21393
Alignment:
Q  87 ttgcttgtaaacagctattagaggatagatttcagaactctcatgttgagttcaacaggaggcaggcaaatagagtagctcacgagttagctca 180  Q
    ||||||| |||||| | |||  ||||||||||||||| |||||||| ||||||||||||||||| | |||||| ||||||||  ||||||||||    
T  21485 ttgcttgcaaacagttgttaatggatagatttcagaa-tctcatgtcgagttcaacaggaggcaaggaaatagggtagctcataagttagctca 21393  T

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