View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_348 (Length: 220)
Name: NF10233A_low_348
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_348 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 45481527 - 45481657
Alignment:
| Q |
1 |
ttcaccacatttttacttgtaatcatcatcttttcgagtttggcttaatgccccttgtcttcatccaatcatcatcctattattaaaattgtggatactc |
100 |
Q |
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| T |
45481527 |
ttcacctcatttgtacttgtaatcatcatcttttcgagtttggcttaatgccccttgccttcatccaatcatcgttctattattaaaattgtggatactc |
45481626 |
T |
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| Q |
101 |
tcaactttttaataaagcaagaaaagtttac |
131 |
Q |
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| T |
45481627 |
tcaactttttaataaagcaagaaaagtttac |
45481657 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 45481653 - 45481704
Alignment:
| Q |
169 |
tttacattacattcaagtttgcttgtaaactatgaatgggccatagaggaca |
220 |
Q |
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| T |
45481653 |
tttacattacattcaagtttgcttgtaaactattaatgggccatagaggaca |
45481704 |
T |
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