View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_349 (Length: 220)
Name: NF10233A_low_349
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_349 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 46620423 - 46620237
Alignment:
| Q |
21 |
caacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggca |
120 |
Q |
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| T |
46620423 |
caacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggca |
46620324 |
T |
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| Q |
121 |
catgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
207 |
Q |
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| T |
46620323 |
catgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
46620237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 46639136 - 46638955
Alignment:
| Q |
26 |
atgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgc |
125 |
Q |
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| T |
46639136 |
atgcagcattattttgcctcatgtacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatgtctttctttttctgtctctttggcacatgc |
46639037 |
T |
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| Q |
126 |
aggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
207 |
Q |
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| T |
46639036 |
aggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
46638955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 46630918 - 46630734
Alignment:
| Q |
23 |
acgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcaca |
122 |
Q |
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| T |
46630918 |
acgaggcagcattgttttgcctcttttacaatccttgcagcaaggattgagatgatcttgttgcgtctggatgtctttccttttttgcctctttggcaca |
46630819 |
T |
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| Q |
123 |
tgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
207 |
Q |
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| T |
46630818 |
tgcaagaattcatttgctatatattccaatgctctaactgtcaatggtctttttctattgctctgtctcctcggatttatatcag |
46630734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 46172880 - 46173049
Alignment:
| Q |
38 |
tttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcattt |
137 |
Q |
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| T |
46172880 |
tttgccttttgttcgagccttgcggcaaggattgaaaagatctttgtgggtctggctgtctttctttttttgtttcttctgtacatgcaaatattcattt |
46172979 |
T |
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| Q |
138 |
gctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
207 |
Q |
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| T |
46172980 |
gctatacattccaatgctctaactgtcaacggtctgtttctagtgctctgtctcctgggatttatatcag |
46173049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 46641643 - 46641821
Alignment:
| Q |
23 |
acgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcaca |
122 |
Q |
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|||| |||||||| ||| |||| |||| ||||||||| |||||||||||||||||||| |||||| | || || |||| ||||| || ||||| |
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| T |
46641643 |
acgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgtgt------ctctccttttatgtctactttgcaca |
46641736 |
T |
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| Q |
123 |
tgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcag |
207 |
Q |
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| T |
46641737 |
tgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctcctcagatttatatcag |
46641821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 15768046 - 15768191
Alignment:
| Q |
62 |
gcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacg |
161 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | || |||||| ||||||||||||||||||| ||||||||||| |
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| T |
15768046 |
gcaaggattgaaaggatcttcatgtgtctggatgtctttctttttttgtctcttttgtacgtgcaggtattcatttgctatacattctaatgctctaact |
15768145 |
T |
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| Q |
162 |
gttaagggtctgttcctagagctctgtctcctcggattcatatcag |
207 |
Q |
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|| || |||||||| |||| ||| |||| ||| ||||| ||||||| |
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| T |
15768146 |
gtcaacggtctgtttctagtgctttgtcgcctaggatttatatcag |
15768191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 1537913 - 1537853
Alignment:
| Q |
23 |
acgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttgg |
83 |
Q |
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| T |
1537913 |
acgaagcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgg |
1537853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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