View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_35 (Length: 398)
Name: NF10233A_low_35
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 37169405 - 37169057
Alignment:
| Q |
1 |
gacatcaaataattatagggnnnnnnngaaaggataggatgaagcgtgaggtgcaggattatggaggatgaccatacattgaaattatttaacacatgga |
100 |
Q |
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| T |
37169405 |
gacatcaaataattatagggaaaaaatgaaaggataggatgaagcgtgaggtgcaggattatggaggatgacaatacattgaaattatttaacacatgga |
37169306 |
T |
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| Q |
101 |
cttatgtttgcaaagaaaagctcaataactccacaggttcgagtattatgtagcatcttcttccactgtttgcttcccaggcgtgatcaactatgtctat |
200 |
Q |
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| T |
37169305 |
cttatgtttgcaaagaaaagctcaataactccacaggttcgagtattatgtagcatcttcttccactgtttgcttcccaggcgtgatcaactatgtctat |
37169206 |
T |
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| Q |
201 |
tcgtgcatggccgcacaagtggcacattttgacaggaccactgtagatacaatgacataacagaaattggtttgagaccagaatgggtgttggaaataga |
300 |
Q |
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| T |
37169205 |
tcgtgcatggccgcacaagtggcacgttttgacaggatcactgtagatacaatgacataacagaaattggtttgagatcagaatgggtgttggaaatgga |
37169106 |
T |
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| Q |
301 |
aagttggattatggatgagggaggtttctggtggtgcgggtgatgaatg |
349 |
Q |
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| T |
37169105 |
aagttggattatggatgagggaggtttctggtggtgcgggtgatgaatg |
37169057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 37168985 - 37168953
Alignment:
| Q |
349 |
gttaagatcatttaactatattaaacttgatgt |
381 |
Q |
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| T |
37168985 |
gttaagatcatttaactatattaaacttgatgt |
37168953 |
T |
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