View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_352 (Length: 219)
Name: NF10233A_low_352
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_352 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 6073565 - 6073749
Alignment:
| Q |
30 |
ggagttcatttgcggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
129 |
Q |
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| T |
6073565 |
ggagttcatttgaggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
6073664 |
T |
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| Q |
130 |
gccggatttgcggatggcggtgcaggcaaagtcggacgaacggtgaggtttgatggagagagattccggcgaggaggatggaagt |
214 |
Q |
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| T |
6073665 |
gccggatttgcggatggcggtgtaggcgaagtcggaggaacgatgaggtttgatggagagagattccggcgaggaggatggaagt |
6073749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 37170181 - 37170044
Alignment:
| Q |
56 |
aggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgaggccggatttg---cggatggcggtgc |
152 |
Q |
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| T |
37170181 |
aggcggcataggtaaacagtaccgatatctccggcgccgatacggcggaggaggtggaagtcacgaaatgtgagagcggacttgcgacggatggcggagt |
37170082 |
T |
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| Q |
153 |
aggcaaagtcggacgaacggtgaggtttgatggagaga |
190 |
Q |
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| T |
37170081 |
aagcgaagtcggaggagcggtgaggtttgagggagaga |
37170044 |
T |
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