View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_353 (Length: 219)

Name: NF10233A_low_353
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_353
NF10233A_low_353
[»] chr4 (8 HSPs)
chr4 (46-201)||(37180158-37180316)
chr4 (46-201)||(37189538-37189696)
chr4 (46-177)||(37181445-37181579)
chr4 (46-193)||(37187841-37187988)
chr4 (96-177)||(38704284-38704369)
chr4 (1-46)||(54148132-54148178)
chr4 (1-46)||(7259055-7259101)
chr4 (1-46)||(16871508-16871554)
[»] chr5 (4 HSPs)
chr5 (54-137)||(27102812-27102898)
chr5 (54-137)||(27096527-27096613)
chr5 (1-42)||(11320633-11320675)
chr5 (1-46)||(24137454-24137500)
[»] chr2 (2 HSPs)
chr2 (1-46)||(8986784-8986830)
chr2 (1-46)||(32291011-32291057)
[»] chr1 (1 HSPs)
chr1 (1-46)||(15629559-15629605)
[»] chr7 (2 HSPs)
chr7 (1-46)||(17921407-17921453)
chr7 (1-46)||(46963272-46963318)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-43)||(14464-14504)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 37180158 - 37180316
Alignment:
Q  46 ggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgtgttgt---ttgcaaaagatgacgagcttctaggctcatgtttgatattg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||||||||||||||||||    
T  37180158 ggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttgatattg 37180257  T
Q  143 tcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttgatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180258 tcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttgatg 37180316  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 37189696 - 37189538
Alignment:
Q  46 ggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgtgttgt---ttgcaaaagatgacgagcttctaggctcatgtttgatattg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||| ||||||||||||||||||||||||||||    
T  37189696 ggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttgatattg 37189597  T
Q  143 tcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttgatg 201  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37189596 tcacaactagaagtaaagttgtgatcaaggatttgaatattgccattgatagtttgatg 37189538  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 37181579 - 37181445
Alignment:
Q  46 ggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgtgttgt---ttgcaaaagatgacgagcttctaggctcatgtttgatattg 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||   |||||||||||| |||||||||||||||||| |||| ||||    
T  37181579 ggtaatgttgttggttttggtaaagtgggaatggctggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgcttgacattg 37181480  T
Q  143 tcacaactagaagtaaagttgtgatgaaggatttg 177  Q
    | ||||| |||||||||||||  ||||||||||||    
T  37181479 tgacaacaagaagtaaagttgcaatgaaggatttg 37181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 37187841 - 37187988
Alignment:
Q  46 ggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgtgttgtttgcaaaagatgacgagcttctaggctcatgtttgatattgtca 145  Q
    |||||||| ||||| ||||||||| |||||||| | || ||||||||||||||||| || |||||||| |||||||||||||||||| |||| || ||||    
T  37187841 ggtaatgtagttggatttggtaaattgggaatgttaggcaaatttggttgtgttgtctgtaaaagatggcgagcttctaggctcatgcttgacatggtca 37187940  T
Q  146 caactagaagtaaagttgtgatgaaggatttgaatattgccattgata 193  Q
    |||| |||||||||| | ||||||||||||||  |  |||||||||||    
T  37187941 caacaagaagtaaagctatgatgaaggatttgcttgatgccattgata 37187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 38704284 - 38704369
Alignment:
Q  96 tgttgtttgcaaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg 177  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||||| |||||||||    
T  38704284 tgttgtttgcaaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg 38704369  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54148132 - 54148178
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  54148132 gttaatttgtaacaagcttaaagcttagtaagcttcagcttgagggg 54148178  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7259101 - 7259055
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||||    
T  7259101 gttaatttgtaacaagcttaaaacttagtaagtttcagcttgagggg 7259055  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16871508 - 16871554
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  16871508 gttaatttgtaacaagtttaaagcttagtaagcttcagcttgagggg 16871554  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 27102898 - 27102812
Alignment:
Q  54 tgttggttttggtaaagtgggaatggttggtaaatttggttgt---gttgtttgcaaaagatgacgagcttctaggctcatgtttga 137  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||   |||||||||||||| |  |||||||||||| ||||||||||    
T  27102898 tgttggttttggtaaagtgggaatgcttggcaaattgggttgtgtagttgtttgcaaaaggttgcgagcttctaggttcatgtttga 27102812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 27096613 - 27096527
Alignment:
Q  54 tgttggttttggtaaagtgggaatggttggtaaatttggttgtgt---tgtttgcaaaagatgacgagcttctaggctcatgtttga 137  Q
    |||||| ||||| |||||||||||| |||| ||||| ||||||||   |||||||||||| |  |||||||||||||||||||||||    
T  27096613 tgttggatttggcaaagtgggaatgtttggcaaattgggttgtgtggttgtttgcaaaaggtttcgagcttctaggctcatgtttga 27096527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11320675 - 11320633
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttga 42  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  11320675 gttaatttgtaacaagcttaaagcttagtaagcttcagcttga 11320633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24137454 - 24137500
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||    
T  24137454 gttaatttgtaacaagcttaaagcttagtaagctttagcttgagggg 24137500  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8986784 - 8986830
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  8986784 gttaatttgtaacaagcttaaagcttagtaagcttcagcttgagggg 8986830  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32291011 - 32291057
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  32291011 gttaattggtaacaagcttaaagcttagtaagcttcagcttgagggg 32291057  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15629605 - 15629559
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  15629605 gttaatttgtaacaagcttaaagcttagtaagcttcagcttgagggg 15629559  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17921453 - 17921407
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||    
T  17921453 gttaatttgtaacaagcttaaagcttagtaagctttagcttgagggg 17921407  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 46963318 - 46963272
Alignment:
Q  1 gttaatttgtaacaagcttaaagcgtagtaag-ttcagcttgagggg 46  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  46963318 gttaatttgtaacaagtttaaagcttagtaagcttcagcttgagggg 46963272  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 14504 - 14464
Alignment:
Q  4 aatttgtaacaagcttaaagcgtagtaag-ttcagcttgag 43  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  14504 aatttgtaacaagcttaaagcttagtaagcttcagcttgag 14464  T

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