View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_355 (Length: 217)

Name: NF10233A_low_355
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_355
NF10233A_low_355
[»] chr4 (8 HSPs)
chr4 (33-196)||(26270882-26271045)
chr4 (56-137)||(21496591-21496672)
chr4 (83-144)||(47892596-47892657)
chr4 (95-135)||(41246405-41246445)
chr4 (58-135)||(7424216-7424293)
chr4 (57-144)||(54069229-54069315)
chr4 (80-138)||(9076532-9076590)
chr4 (61-105)||(24531850-24531894)
[»] chr7 (4 HSPs)
chr7 (81-144)||(42281934-42281997)
chr7 (64-106)||(30777809-30777851)
chr7 (79-135)||(5361124-5361180)
chr7 (80-144)||(5854647-5854711)
[»] chr3 (3 HSPs)
chr3 (80-144)||(49895909-49895973)
chr3 (80-138)||(2373788-2373846)
chr3 (98-138)||(21873712-21873752)
[»] scaffold0110 (1 HSPs)
scaffold0110 (80-138)||(33173-33231)
[»] chr5 (4 HSPs)
chr5 (64-141)||(24993819-24993896)
chr5 (62-102)||(24917746-24917786)
chr5 (62-102)||(24993656-24993696)
chr5 (84-144)||(14731860-14731920)
[»] chr1 (3 HSPs)
chr1 (57-110)||(4117685-4117738)
chr1 (64-138)||(24143718-24143792)
chr1 (57-138)||(12241347-12241428)
[»] chr6 (1 HSPs)
chr6 (57-135)||(7145581-7145659)
[»] chr2 (1 HSPs)
chr2 (57-134)||(35225008-35225085)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 26270882 - 26271045
Alignment:
Q  33 atgaataataaatttggaccgagggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaa 132  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26270882 atgaataataaattcggaccgagggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaa 26270981  T
Q  133 tttcaaagaccatcttcgttatttactcgnnnnnnnngtattgaaaatttaattattgcactat 196  Q
    ||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||    
T  26270982 tttcaaagaccatcttcgttattcactcgttttttttgtattgaaaatttaattattgcactat 26271045  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 21496591 - 21496672
Alignment:
Q  56 ggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttca 137  Q
    ||||||| |||||||||||| || |||||||||| ||||||||||||  ||| || ||| ||||||||||| ||||||||||    
T  21496591 ggattaacattttgcaattctaaggatcattttgaaatattgataatacgagtgactaggttgatacaatcctacaatttca 21496672  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 47892657 - 47892596
Alignment:
Q  83 cattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 144  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  47892657 cattttggaatatcgataatgtgagggattagattggtacaatcctacaatttcaaggacca 47892596  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 41246445 - 41246405
Alignment:
Q  95 ttgataatgtgagagattagattgatacaatcatacaattt 135  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  41246445 ttgataatgtgagggattagattgatacaatcatacaattt 41246405  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 7424293 - 7424216
Alignment:
Q  58 attaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 135  Q
    ||||| ||||||||||| ||  |||||||||| ||||||| |||||| ||||| ||| |||||||| || ||||||||    
T  7424293 attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttgatacagtcctacaattt 7424216  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 54069315 - 54069229
Alignment:
Q  57 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 144  Q
    |||||||||||||||||| ||| ||  ||||||||||||| ||||||| || |||||| |||| ||||   ||||||||||| |||||    
T  54069315 gattaatattttgcaatttcaaggaaaattttggaatattcataatgt-agggattaggttgagacaactgtacaatttcaaggacca 54069229  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 9076532 - 9076590
Alignment:
Q  80 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 138  Q
    |||||||||| |||||||||||||||||||| ||  || |||||| | |||||||||||    
T  9076532 gatcattttgaaatattgataatgtgagagactaagttaatacaaccttacaatttcaa 9076590  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 24531894 - 24531850
Alignment:
Q  61 aatattttgcaattccaatgatcattttggaatattgataatgtg 105  Q
    ||||| |||||||||  ||||||||||| ||||||||||||||||    
T  24531894 aatatattgcaattcttatgatcattttagaatattgataatgtg 24531850  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 42281997 - 42281934
Alignment:
Q  81 atcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 144  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||| |||||    
T  42281997 atcattttgaaatattgataatgtgagagactagattgacacaattatacaatttcaaggacca 42281934  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 30777851 - 30777809
Alignment:
Q  64 attttgcaattccaatgatcattttggaatattgataatgtga 106  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||    
T  30777851 attttgcaatttcaatgttcattttgcaatattgataatgtga 30777809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 5361180 - 5361124
Alignment:
Q  79 tgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 135  Q
    ||||||||||| ||||| |||||| |||| || | ||||||||||||| ||||||||    
T  5361180 tgatcattttgaaatatcgataatatgagggactggattgatacaatcttacaattt 5361124  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 5854647 - 5854711
Alignment:
Q  80 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 144  Q
    ||||||||| ||||||||||||||| || || ||| ||| ||||||| ||||| ||||| |||||    
T  5854647 gatcattttagaatattgataatgtaagggactaggttgttacaatcctacaacttcaaggacca 5854711  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 49895909 - 49895973
Alignment:
Q  80 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 144  Q
    ||||||||||||||||||||||| || | ||||||  |||||||||| ||||||||||| |||||    
T  49895909 gatcattttggaatattgataatatgggggattagggtgatacaatcttacaatttcaaggacca 49895973  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 2373846 - 2373788
Alignment:
Q  80 gatcattttggaatattgataatgt-gagagattagattgatacaatcatacaatttcaa 138  Q
    ||||||||||||||||||||||||| |||| | || |||||||||||| |||||||||||    
T  2373846 gatcattttggaatattgataatgtggaga-actaaattgatacaatcttacaatttcaa 2373788  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 21873712 - 21873752
Alignment:
Q  98 ataatgtgagagattagattgatacaatcatacaatttcaa 138  Q
    ||||||||||||| ||||||||||||| | |||||||||||    
T  21873712 ataatgtgagagactagattgatacaaacctacaatttcaa 21873752  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 33173 - 33231
Alignment:
Q  80 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 138  Q
    |||||||||||||||| |||||||||| ||| |||||| ||||| || |||||||||||    
T  33173 gatcattttggaatatcgataatgtgaaagactagatttatacagtcctacaatttcaa 33231  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 24993819 - 24993896
Alignment:
Q  64 attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaaga 141  Q
    |||||| |||| ||| |||||||||||||||| ||||| ||| |||| ||| |||||| ||||  |||||||||||||    
T  24993819 attttgaaatttcaaagatcattttggaatatcgataaagtgggagactaggttgatataatcgaacaatttcaaaga 24993896  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 24917786 - 24917746
Alignment:
Q  62 atattttgcaattccaatgatcattttggaatattgataat 102  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24917786 atattttgcaattccagggatcattttggaatattgataat 24917746  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 24993696 - 24993656
Alignment:
Q  62 atattttgcaattccaatgatcattttggaatattgataat 102  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24993696 atattttgcaattccagggatcattttggaatattgataat 24993656  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14731920 - 14731860
Alignment:
Q  84 attttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 144  Q
    |||||||||||| |||||||| || || || ||||| |||||| |||||||||||| ||||    
T  14731920 attttggaatatcgataatgtaagggactaaattgacacaatcttacaatttcaaaaacca 14731860  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 4117685 - 4117738
Alignment:
Q  57 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagaga 110  Q
    |||||| ||||| ||||||||| ||| ||||| |||||||||||||||||||||    
T  4117685 gattaacattttccaattccaaggataattttcgaatattgataatgtgagaga 4117738  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 24143718 - 24143792
Alignment:
Q  64 attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 138  Q
    ||||||||||| ||| ||||| |||  |||||||| ||||||| | | ||||||||||||||  |||||||||||    
T  24143718 attttgcaatttcaaagatcaatttataatattgaaaatgtgatatactagattgatacaattctacaatttcaa 24143792  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 12241428 - 12241347
Alignment:
Q  57 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 138  Q
    |||||| ||||||||||| |||  ||||||||  ||||| ||||||||||| || || |||||||||  | |||||||||||    
T  12241428 gattaaaattttgcaatttcaagaatcattttaaaatatcgataatgtgagggactacattgatacagccctacaatttcaa 12241347  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 7145581 - 7145659
Alignment:
Q  57 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 135  Q
    |||||||||||| |||||  |  ||||||||||||||||||||||| | ||||||||  |||| ||| || ||||||||    
T  7145581 gattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacacagtcctacaattt 7145659  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 35225008 - 35225085
Alignment:
Q  57 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatt 134  Q
    ||||||||| |||||||||||  || |||||||||||||| ||||||||   || ||| ||||||||||  |||||||    
T  35225008 gattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt 35225085  T

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