View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_356 (Length: 217)
Name: NF10233A_low_356
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_356 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 40010 - 40183
Alignment:
| Q |
19 |
tgaagcagcaaaacaacgcggtgttgaggatctctatctaggcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctc |
118 |
Q |
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| T |
40010 |
tgaagcagcaaaacgacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctc |
40109 |
T |
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| Q |
119 |
aaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatct |
192 |
Q |
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| T |
40110 |
aaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatct |
40183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 33391 - 33511
Alignment:
| Q |
21 |
aagcagcaaaacaacgcggtgttgaggatctctatctaggcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctcaa |
120 |
Q |
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| T |
33391 |
aagcagcaaaacgacgtggggtcgaggatctctatctatgcatggtagaagtgaccttgtcgcctaccattttcgtgtgtgaaacacttgtggttctcaa |
33490 |
T |
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| Q |
121 |
attggatagattaaatgtacc |
141 |
Q |
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| T |
33491 |
attggatagaataattgtacc |
33511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 21734 - 21826
Alignment:
| Q |
20 |
gaagcagcaaaacaacgcggtgttgaggatctctatctaggcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtg |
112 |
Q |
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| T |
21734 |
gaagaagcaaaacgacgtggggtcgaggatctctatctaaacttgttagaagtgaccttgtcgcctaccattttcgtttgtagaacacttgtg |
21826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 19970313 - 19970209
Alignment:
| Q |
83 |
cctaccattttcgtgtgtgaaacacttgtggtcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaa |
182 |
Q |
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| T |
19970313 |
cctaccattttctgctgtgaaacacttgtggttctgaaattgtttagcatacatgtaacaactatgtttcgttcttctgttgatcttccttcgctcaaaa |
19970214 |
T |
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| Q |
183 |
ccctt |
187 |
Q |
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||||| |
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| T |
19970213 |
ccctt |
19970209 |
T |
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