View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_358 (Length: 216)
Name: NF10233A_low_358
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_358 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 5182080 - 5182264
Alignment:
| Q |
15 |
tggacatcagcaataacatgtttgatgctaaacttccggagtgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatctgttcactgg |
114 |
Q |
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|||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||| ||| |
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| T |
5182080 |
tggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatctgttcagtgg |
5182179 |
T |
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| Q |
115 |
aaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttcattg |
199 |
Q |
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| T |
5182180 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattg |
5182264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 5195474 - 5195658
Alignment:
| Q |
15 |
tggacatcagcaataacatgtttgatgctaaacttccggagtgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatctgttcactgg |
114 |
Q |
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|||| |||||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| |
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| T |
5195474 |
tggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtgg |
5195573 |
T |
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| Q |
115 |
aaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttcattg |
199 |
Q |
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| T |
5195574 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattg |
5195658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 5159832 - 5160016
Alignment:
| Q |
15 |
tggacatcagcaataacatgtttgatgctaaacttccggagtgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatctgttcactgg |
114 |
Q |
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|||| |||||| | ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| |
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| T |
5159832 |
tggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtgg |
5159931 |
T |
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| Q |
115 |
aaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttcattg |
199 |
Q |
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| T |
5159932 |
aaagtttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattg |
5160016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 4842777 - 4842596
Alignment:
| Q |
15 |
tggacatcagcaataacatgtttgatgctaaacttccggagtgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatctgttcactgg |
114 |
Q |
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|||| |||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||| ||| |
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| T |
4842777 |
tggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctgttcggtgg |
4842678 |
T |
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| Q |
115 |
aaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttca |
196 |
Q |
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|||||||||||||||||||||||||||||||||| || ||| |||||| ||| || ||||||||||||||||||||||||| |
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| T |
4842677 |
aaattttccatccttcactaccaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttca |
4842596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 5213645 - 5213824
Alignment:
| Q |
20 |
atcagcaataacatgtttgatgctaaacttccggagtgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaatt |
119 |
Q |
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|||||| ||||||||||| || ||||||| |||||||||||||||||||||||||| | |||||||| ||| || ||||| |||||| |||||||| |
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| T |
5213645 |
atcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaacctgaatgttcttgaacttagctataatttgttcagtggaaatt |
5213744 |
T |
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| Q |
120 |
ttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttcattg |
199 |
Q |
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| T |
5213745 |
ttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaattacatgcaaggatcattttcattg |
5213824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 5172748 - 5172929
Alignment:
| Q |
15 |
tggacatcagcaataacatgtttgatgctaaacttccggagtgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatctgttcactgg |
114 |
Q |
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|||| |||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| || ||||||| |||| ||| |
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| T |
5172748 |
tggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctattcagtgg |
5172847 |
T |
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| Q |
115 |
aaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttca |
196 |
Q |
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||||||||||||||||| || |||||||||||| || ||| |||||| ||| || ||||||||||||||||||||||||| |
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| T |
5172848 |
aaattttccatccttcattagtaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttca |
5172929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 4857151 - 4857067
Alignment:
| Q |
114 |
gaaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaaggatcattttcattg |
199 |
Q |
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| T |
4857151 |
gaaattttccatccttcactaccaatctcacatctcttgcatac-tatccatctatggaaattacatgcaaggatcattttcattg |
4857067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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