View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_360 (Length: 214)
Name: NF10233A_low_360
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_360 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 15091117 - 15090928
Alignment:
| Q |
9 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
108 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15091117 |
tggacatcgcgaaggtcacatggttcactatctcgacccgtttttggttacaaggttgtcacacagaatgaaggtagaaatggcgattgggttatggttc |
15091018 |
T |
|
| Q |
109 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15091017 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccacaggtggtgcacgtggaatgtttaatgttggac |
15090928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 35074796 - 35074981
Alignment:
| Q |
9 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
108 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
35074796 |
tggacatcgcgaaggtcacatggttcactatctcgacccatttttggtaacaaggttgtcacacagaatgaaggtagaaatggcgatcgggttatggttc |
35074895 |
T |
|
| Q |
109 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgtt |
194 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
35074896 |
ataataacaaagacaatcatgatcgttttcttggaggaaacagttgaggaaaattcacaggtggtgcacgtggaatgtttaatgtt |
35074981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 43010593 - 43010752
Alignment:
| Q |
33 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43010593 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43010692 |
T |
|
| Q |
133 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
43010693 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggac |
43010752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 43012890 - 43013017
Alignment:
| Q |
33 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43012890 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43012989 |
T |
|
| Q |
133 |
gttttcctggaggaaacagtggaggaaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43012990 |
gttttcctggaggaaacagtggaggaaa |
43013017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 25203934 - 25203749
Alignment:
| Q |
9 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
108 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25203934 |
tggacatcgagaaggtcacatggttcactatctcgacctgtttttggtaacaaggttgttacacaaaatgaaggtagaaagggcgattgggttatggttc |
25203835 |
T |
|
| Q |
109 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgtt |
194 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
25203834 |
gtaataacaaagacaatcgtgatcattttcctggaggaaacagtggaggaagatccataggtggtttgcgtggaatgtttaatgtt |
25203749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 25676775 - 25676616
Alignment:
| Q |
33 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25676775 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
25676676 |
T |
|
| Q |
133 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
25676675 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggac |
25676616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University