View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_362 (Length: 212)

Name: NF10233A_low_362
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_362
NF10233A_low_362
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-212)||(53813-54004)
[»] chr4 (2 HSPs)
chr4 (60-123)||(15707358-15707421)
chr4 (21-65)||(15707440-15707484)
[»] scaffold0642 (2 HSPs)
scaffold0642 (60-123)||(4102-4165)
scaffold0642 (21-65)||(4184-4228)
[»] scaffold0345 (2 HSPs)
scaffold0345 (60-123)||(14014-14077)
scaffold0345 (21-65)||(14096-14140)
[»] scaffold0105 (2 HSPs)
scaffold0105 (60-123)||(24904-24967)
scaffold0105 (21-65)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (68-123)||(1249-1304)
scaffold1526 (21-65)||(1173-1217)
[»] chr8 (2 HSPs)
chr8 (60-123)||(44495504-44495567)
chr8 (21-62)||(44495589-44495630)
[»] chr2 (2 HSPs)
chr2 (68-123)||(3378229-3378284)
chr2 (21-65)||(3378316-3378360)
[»] chr6 (1 HSPs)
chr6 (124-208)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 53813 - 54004
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 120  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53813 aagaacgaagccactcaccgctctggagtgaattcatggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 53912  T
Q  121 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaatttggtcagtact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53913 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaattttgtcagtact 54004  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 15707421 - 15707358
Alignment:
Q  60 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707421 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 15707358  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 15707484 - 15707440
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 65  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707484 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 15707440  T

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Target: scaffold0642 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 4165 - 4102
Alignment:
Q  60 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4165 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 4102  T

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Target: scaffold0642; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4228 - 4184
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 65  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4228 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 4184  T

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Target: scaffold0345 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 14077 - 14014
Alignment:
Q  60 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14077 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 14014  T

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Target: scaffold0345; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 14140 - 14096
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 65  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14140 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 14096  T

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Target: scaffold0105 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 24904 - 24967
Alignment:
Q  60 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24904 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 24967  T

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Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 24841 - 24885
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 65  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24841 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 24885  T

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Target: scaffold1526 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 1249 - 1304
Alignment:
Q  68 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1249 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 1304  T

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Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 1173 - 1217
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 65  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1173 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 1217  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 44495567 - 44495504
Alignment:
Q  60 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44495567 atgggtatgaatggagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 44495504  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 44495630 - 44495589
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatg 62  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  44495630 aagaacgaagccactcaccgatctggagtgaattcatggatg 44495589  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 3378284 - 3378229
Alignment:
Q  68 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378284 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 3378229  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 3378360 - 3378316
Alignment:
Q  21 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 65  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378360 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 3378316  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 21221922 - 21221835
Alignment:
Q  124 tattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgtt---ttgatcctctttggtaatttggtcag 208  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||| || | ||||   ||||||||||||||||||||| ||||    
T  21221922 tattatatcactattaggagcaacatcatcagccacagataattcctattttcagtgttttcttgatcctctttggtaatttgttcag 21221835  T

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